RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 HOXD13P35453 343 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 NPEPPSP55786 919 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 JAM2P57087 298 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 CPNE8Q86YQ8 564 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 SLC35C1Q96A29 364 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 RXFP1Q9HBX9 757 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 CNOT7Q9UIV1 285 aaKnown RBP17.09■□□□□ 0.33
CKAP4-201ENST00000378026 DNAJC12Q9UKB3 198 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 NENFQ9UMX5 172 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 GCNT3O95395 438 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 NR3C1P04150 777 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 SLC16A2P36021 539 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 CTTNQ14247 550 aaKnown RBP17.09■□□□□ 0.33
CKAP4-201ENST00000378026 MESDQ14696 234 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 TRIP13Q15645 432 aaPredicted RBP17.09■□□□□ 0.33
CKAP4-201ENST00000378026 VSTM1Q6UX27 236 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 GBP7Q8N8V2 638 aaPredicted RBP17.09■□□□□ 0.33
CKAP4-201ENST00000378026 CDC42EP4Q9H3Q1 356 aaKnown RBP17.09■□□□□ 0.33
CKAP4-201ENST00000378026 SPDYE5A6NIY4 337 aa17.08■□□□□ 0.33
CKAP4-201ENST00000378026 BRAFP15056 766 aa17.08■□□□□ 0.33
CKAP4-201ENST00000378026 TARSP26639 723 aaKnown RBP17.08■□□□□ 0.33
CKAP4-201ENST00000378026 TUBP50607 506 aa17.08■□□□□ 0.33
CKAP4-201ENST00000378026 VSIG1Q86XK7 387 aa17.08■□□□□ 0.33
CKAP4-201ENST00000378026 TRIM7Q9C029 511 aa17.08■□□□□ 0.33
CKAP4-201ENST00000378026 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.08■□□□□ 0.32
CKAP4-201ENST00000378026 MAP3K13O43283 966 aa17.08■□□□□ 0.32
CKAP4-201ENST00000378026 TMEM253P0C7T8 217 aa17.08■□□□□ 0.32
CKAP4-201ENST00000378026 SOX5P35711 763 aa17.08■□□□□ 0.32
CKAP4-201ENST00000378026 ZNF746Q6NUN9 644 aaPredicted RBP17.08■□□□□ 0.32
CKAP4-201ENST00000378026 FOXR2Q6PJQ5 311 aa17.08■□□□□ 0.32
CKAP4-201ENST00000378026 UTP4Q969X6 686 aaKnown RBP17.08■□□□□ 0.32
CKAP4-201ENST00000378026 RARGP13631 454 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 MXRA7P84157 204 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 ZNF449Q6P9G9 518 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 ASRGL1Q7L266 308 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 PWWP2AQ96N64 755 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 REEP2Q9BRK0 252 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 DHX36Q9H2U1 1008 aaKnown RBP17.07■□□□□ 0.32
CKAP4-201ENST00000378026 HAO1Q9UJM8 370 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 USP17L15C9J2P7 530 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 USP17L13C9JLJ4 530 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 USP17L11C9JVI0 530 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 USP17L18D6R9N7 530 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 USP17L22D6RA61 530 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 USP17L17D6RBQ6 530 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 USP17L19D6RCP7 530 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 USP17L20D6RJB6 530 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 ATMINO43313 823 aaPredicted RBP17.07■□□□□ 0.32
CKAP4-201ENST00000378026 LMNB1P20700 586 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 CHRNA3P32297 505 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 VPS41P49754 854 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 SESN3P58005 492 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 CYP4A11Q02928 519 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 USP17L24Q0WX57 530 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 ORC2Q13416 577 aaPredicted RBP17.07■□□□□ 0.32
CKAP4-201ENST00000378026 PPP2R5EQ16537 467 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 USP17L6PQ6QN14 398 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 PPP4R3CPQ6ZMV5 832 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 ECHDC2Q86YB7 292 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 CEP120Q8N960 986 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 SLC30A5Q8TAD4 765 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 FBF1Q8TES7 1133 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 INTUQ9ULD6 942 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 CALUO43852 315 aaPredicted RBP17.07■□□□□ 0.32
CKAP4-201ENST00000378026 LUC7L3O95232 432 aaKnown RBP17.07■□□□□ 0.32
CKAP4-201ENST00000378026 KYNUQ16719 465 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 CGB2Q6NT52 195 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 CADPS2Q86UW7 1296 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 SRRM1Q8IYB3 904 aaKnown RBP17.07■□□□□ 0.32
CKAP4-201ENST00000378026 RDH13Q8NBN7 331 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 BTBD6Q96KE9 485 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 GPR101Q96P66 508 aaPredicted RBP17.07■□□□□ 0.32
CKAP4-201ENST00000378026 TSC22D3Q99576 134 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 PIDD1Q9HB75 910 aa17.07■□□□□ 0.32
CKAP4-201ENST00000378026 CPSF2Q9P2I0 782 aaKnown RBP17.07■□□□□ 0.32
CKAP4-201ENST00000378026 GJB6O95452 261 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 GNAT1P11488 350 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 BRD2P25440 801 aaKnown RBP17.06■□□□□ 0.32
CKAP4-201ENST00000378026 ICA1Q05084 483 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 CALCOCO2Q13137 446 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 GIT2Q14161 759 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 RBBP5Q15291 538 aaKnown RBP17.06■□□□□ 0.32
CKAP4-201ENST00000378026 TTBK2Q6IQ55 1244 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 ANO7Q6IWH7 933 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 BTNL9Q6UXG8 535 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 INTS8Q75QN2 995 aaKnown RBP17.06■□□□□ 0.32
CKAP4-201ENST00000378026 ANKLE1Q8NAG6 615 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 ERP27Q96DN0 273 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 TAOK3Q9H2K8 898 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 BCL9O00512 1426 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 KDM3AQ9Y4C1 1321 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 RREB1Q92766 1687 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 A6NHS1 94 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 SNUPNO95149 360 aaKnown RBP17.06■□□□□ 0.32
CKAP4-201ENST00000378026 TRIM49P0CI25 452 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 TRIM49CP0CI26 452 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 PYGMP11217 842 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 GBP1P32455 592 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 CHKAP35790 457 aa17.06■□□□□ 0.32
CKAP4-201ENST00000378026 RPS8P62241 208 aaKnown RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms