RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 MRPL9Q9BYD2 267 aaKnown RBP24.19■■□□□ 1.46
CCDC28B-201ENST00000373602 CD320Q9NPF0 282 aa24.19■■□□□ 1.46
CCDC28B-201ENST00000373602 FAM50BQ9Y247 325 aa24.19■■□□□ 1.46
CCDC28B-201ENST00000373602 PCDHGC5Q9Y5F6 944 aa24.19■■□□□ 1.46
CCDC28B-201ENST00000373602 FSCN2O14926 492 aa24.18■■□□□ 1.46
CCDC28B-201ENST00000373602 DGAT1O75907 488 aa24.18■■□□□ 1.46
CCDC28B-201ENST00000373602 SPATA31C1P0DKV0 1188 aa24.18■■□□□ 1.46
CCDC28B-201ENST00000373602 XRCC6P12956 609 aaKnown RBP eCLIP24.18■■□□□ 1.46
CCDC28B-201ENST00000373602 PPM1AP35813 382 aa24.18■■□□□ 1.46
CCDC28B-201ENST00000373602 RARRES1P49788 294 aa24.18■■□□□ 1.46
CCDC28B-201ENST00000373602 ERVFC1P60507 584 aa24.18■■□□□ 1.46
CCDC28B-201ENST00000373602 ZNF174Q15697 407 aa24.18■■□□□ 1.46
CCDC28B-201ENST00000373602 PDE12Q6L8Q7 609 aaKnown RBP24.18■■□□□ 1.46
CCDC28B-201ENST00000373602 NOSTRINQ8IVI9 506 aa24.18■■□□□ 1.46
CCDC28B-201ENST00000373602 MICAL1Q8TDZ2 1067 aa24.18■■□□□ 1.46
CCDC28B-201ENST00000373602 NRIP1P48552 1158 aa24.17■■□□□ 1.46
CCDC28B-201ENST00000373602 MXD4Q14582 209 aaPredicted RBP24.17■■□□□ 1.46
CCDC28B-201ENST00000373602 TTC38Q5R3I4 469 aa24.17■■□□□ 1.46
CCDC28B-201ENST00000373602 PIGOQ8TEQ8 1089 aa24.17■■□□□ 1.46
CCDC28B-201ENST00000373602 LPPQ93052 612 aa24.17■■□□□ 1.46
CCDC28B-201ENST00000373602 SPG21Q9NZD8 308 aa24.17■■□□□ 1.46
CCDC28B-201ENST00000373602 PUF60Q9UHX1 559 aaKnown RBP24.17■■□□□ 1.46
CCDC28B-201ENST00000373602 BDP1A6H8Y1 2624 aa24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 OR52Z1P0C646 297 aa24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 HOXA11P31270 313 aaPredicted RBP24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 ARL2P36404 184 aa24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 PBX3P40426 434 aa24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 TRAPPC10P48553 1259 aa24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 PTENP60484 403 aa24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 POU5F1BQ06416 359 aa24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 GNL2Q13823 731 aaKnown RBP24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 RBM23Q86U06 439 aaKnown RBP24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 CATSPER3Q86XQ3 398 aa24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 GJD3Q8N144 294 aa24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 CCDC43Q96MW1 224 aaKnown RBP24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 TLE6Q9H808 572 aa24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 TUFT1Q9NNX1 390 aa24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 PCDHB2Q9Y5E7 798 aa24.16■■□□□ 1.46
CCDC28B-201ENST00000373602 A0A087WWV3 80 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 MEIS3P2A8K0S8 358 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 ST18O60284 1047 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 TECP42680 631 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 NDUFV1P49821 464 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 KRT17Q04695 432 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 TFDP1Q14186 410 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 PCBP1Q15365 356 aaKnown RBP eCLIP24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 CLUL1Q15846 466 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 LONRF3Q496Y0 759 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 GLB1LQ6UWU2 654 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 IFNLR1Q8IU57 520 aaPredicted RBP24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 SLC39A11Q8N1S5 342 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 ASAP3Q8TDY4 903 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 PGBD4Q96DM1 585 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 MSLNLQ96KJ4 702 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 POLR3CQ9BUI4 534 aaPredicted RBP24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 CLEC1BQ9P126 229 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 PRKAG3Q9UGI9 489 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 CD207Q9UJ71 328 aa24.15■■□□□ 1.46
CCDC28B-201ENST00000373602 MBTPS2O43462 519 aa24.14■■□□□ 1.45
CCDC28B-201ENST00000373602 MED24O75448 989 aa24.14■■□□□ 1.45
CCDC28B-201ENST00000373602 OFD1O75665 1012 aa24.14■■□□□ 1.45
CCDC28B-201ENST00000373602 U2AF2P26368 475 aaKnown RBP eCLIP24.14■■□□□ 1.45
CCDC28B-201ENST00000373602 SMAD4Q13485 552 aaKnown RBP24.14■■□□□ 1.45
CCDC28B-201ENST00000373602 SMAD2Q15796 467 aaKnown RBP24.14■■□□□ 1.45
CCDC28B-201ENST00000373602 UBXN11Q5T124 520 aa24.14■■□□□ 1.45
CCDC28B-201ENST00000373602 MRPL10Q7Z7H8 261 aaKnown RBP24.14■■□□□ 1.45
CCDC28B-201ENST00000373602 CDCA3Q99618 268 aaPredicted RBP24.14■■□□□ 1.45
CCDC28B-201ENST00000373602 TBC1D13Q9NVG8 400 aa24.14■■□□□ 1.45
CCDC28B-201ENST00000373602 NOL7Q9UMY1 257 aaKnown RBP24.14■■□□□ 1.45
CCDC28B-201ENST00000373602 PER2O15055 1255 aa24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 GLP2RO95838 553 aa24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 GLRA2P23416 452 aa24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 ALDH7A1P49419 539 aaKnown RBP24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 BCAR1P56945 870 aa24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 DUSP6Q16828 381 aa24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 NOMO2Q5JPE7 1267 aa24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 AGMOQ6ZNB7 445 aa24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 C4orf32Q8N8J7 132 aa24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 ERMNQ8TAM6 284 aa24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 KHSRPQ92945 711 aaKnown RBP eCLIP24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 NACC1Q96RE7 527 aa24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 TCF25Q9BQ70 676 aa24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 C1QTNF1Q9BXJ1 281 aa24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 EPHX3Q9H6B9 360 aa24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 NGRNQ9NPE2 291 aaKnown RBP24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 DBR1Q9UK59 544 aaKnown RBP24.13■■□□□ 1.45
CCDC28B-201ENST00000373602 FSD2A1L4K1 749 aa24.12■■□□□ 1.45
CCDC28B-201ENST00000373602 TSPAN1O60635 241 aa24.12■■□□□ 1.45
CCDC28B-201ENST00000373602 USO1O60763 962 aaKnown RBP24.12■■□□□ 1.45
CCDC28B-201ENST00000373602 ERLIN2O94905 339 aa24.12■■□□□ 1.45
CCDC28B-201ENST00000373602 EYA4O95677 639 aa24.12■■□□□ 1.45
CCDC28B-201ENST00000373602 RPA1P27694 616 aa24.12■■□□□ 1.45
CCDC28B-201ENST00000373602 AXLP30530 894 aa24.12■■□□□ 1.45
CCDC28B-201ENST00000373602 ZP2Q05996 745 aa24.12■■□□□ 1.45
CCDC28B-201ENST00000373602 COASYQ13057 564 aa24.12■■□□□ 1.45
CCDC28B-201ENST00000373602 CAPSQ13938 189 aa24.12■■□□□ 1.45
CCDC28B-201ENST00000373602 PLPP4Q5VZY2 271 aa24.12■■□□□ 1.45
CCDC28B-201ENST00000373602 NFKBIZQ9BYH8 718 aa24.12■■□□□ 1.45
CCDC28B-201ENST00000373602 UPF2Q9HAU5 1272 aaKnown RBP24.12■■□□□ 1.45
CCDC28B-201ENST00000373602 ENTPD7Q9NQZ7 604 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms