RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ZNF211Q13398 564 aaPredicted RBP12.21□□□□□ -0.46
PTPRF-203ENST00000372407 MAPK6Q16659 721 aa12.21□□□□□ -0.46
PTPRF-203ENST00000372407 CDO1Q16878 200 aa12.21□□□□□ -0.46
PTPRF-203ENST00000372407 ICE2Q659A1 982 aa12.21□□□□□ -0.46
PTPRF-203ENST00000372407 KRT39Q6A163 491 aa12.21□□□□□ -0.46
PTPRF-203ENST00000372407 LINC00116Q8NCU8 138 aa12.21□□□□□ -0.46
PTPRF-203ENST00000372407 FGD4Q96M96 766 aa12.21□□□□□ -0.46
PTPRF-203ENST00000372407 FIS1Q9Y3D6 152 aa12.21□□□□□ -0.46
PTPRF-203ENST00000372407 PFASO15067 1338 aa12.21□□□□□ -0.46
PTPRF-203ENST00000372407 TARSL2A2RTX5 802 aaKnown RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 USP17L10C9JJH3 530 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 NCK2O43639 380 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 IL1RL1Q01638 556 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 MTF1Q14872 753 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 E4F1Q66K89 784 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 EPM2AIP1Q7L775 607 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 TRIM59Q8IWR1 403 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 ZNF564Q8TBZ8 553 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 MORC4Q8TE76 937 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 CELF1Q92879 486 aaKnown RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 GPR101Q96P66 508 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 STOML1Q9UBI4 398 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 STRIP2Q9ULQ0 834 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 ORC6Q9Y5N6 252 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 PNPLA7Q6ZV29 1317 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 RFX1P22670 979 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 VAMP7P51809 220 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 CACNB3P54284 484 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 POLE2P56282 527 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 OCRLQ01968 901 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 RABL6Q3YEC7 729 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 TAF1BQ53T94 588 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 TMEM270Q6UE05 265 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 RNF139Q8WU17 664 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 RFFLQ8WZ73 363 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 DPF2Q92785 391 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 ATP6V1G3Q96LB4 118 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 FAM96AQ9H5X1 160 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 FBXO2Q9UK22 296 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 POTEFA5A3E0 1075 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 APOEP02649 317 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 POTEIP0CG38 1075 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 XPAP23025 273 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 TSTA3Q13630 321 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 SCARF1Q14162 830 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 KLHL38Q2WGJ6 581 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 NBPF10Q6P3W6 841 aaKnown RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 POTEGQ6S5H5 508 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 POTEEQ6S8J3 1075 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 PODNQ7Z5L7 613 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 THOC1Q96FV9 657 aaKnown RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 XAB2Q9HCS7 855 aaKnown RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 POLD4Q9HCU8 107 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 HSPA4LO95757 839 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 ATP1A1P05023 1023 aaKnown RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 P4HBP07237 508 aaKnown RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 VSNL1P62760 191 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 HDLBPQ00341 1268 aaKnown RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 MDM2Q00987 491 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 QRICH1Q2TAL8 776 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 BEND6Q5SZJ8 279 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 KLC3Q6P597 504 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 GLYCTKQ8IVS8 523 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 OR6B3Q8NGW1 331 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 HSPH1Q92598 858 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 DHX38Q92620 1227 aaKnown RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 RNF25Q96BH1 459 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 TRIM9Q9C026 710 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 NBPF3Q9H094 633 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 TMEM60Q9H2L4 133 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 ATP6V0A4Q9HBG4 840 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 TMEM260Q9NX78 707 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 LIMA1Q9UHB6 759 aaKnown RBP12.2□□□□□ -0.46
PTPRF-203ENST00000372407 INTUQ9ULD6 942 aa12.2□□□□□ -0.46
PTPRF-203ENST00000372407 F5H6K3 240 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 CTIFO43310 598 aaKnown RBP12.19□□□□□ -0.46
PTPRF-203ENST00000372407 CRKP46108 304 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 QARSP47897 775 aaKnown RBP12.19□□□□□ -0.46
PTPRF-203ENST00000372407 DEUP1Q05D60 604 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 KLRC3Q07444 240 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 DYDC2Q96IM9 177 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 FAM167AQ96KS9 214 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 LRRC37BQ96QE4 947 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 IRX2Q9BZI1 471 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-203ENST00000372407 APOBEC2Q9Y235 224 aaKnown RBP12.19□□□□□ -0.46
PTPRF-203ENST00000372407 A0A1B0GTH6 734 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 SLC16A4O15374 487 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 TDP2O95551 362 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 USP11P51784 963 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 KIF22Q14807 665 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 Q3C1V9 767 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 TRIM67Q6ZTA4 783 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 SMIM5Q71RC9 77 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 ASNSD1Q9NWL6 643 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 DONSONQ9NYP3 566 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 TTC7AQ9ULT0 858 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-203ENST00000372407 SNX12Q9UMY4 172 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 DENND3A2RUS2 1198 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 H0Y3Z8 333 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 CHEK2O96017 543 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms