RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 UBXN11Q5T124 520 aa21.06■□□□□ 0.96
CKS1B-203ENST00000368439 TWF2Q6IBS0 349 aaKnown RBP21.06■□□□□ 0.96
CKS1B-203ENST00000368439 CCDC43Q96MW1 224 aaKnown RBP21.06■□□□□ 0.96
CKS1B-203ENST00000368439 MMTAG2Q9BU76 263 aaKnown RBP21.06■□□□□ 0.96
CKS1B-203ENST00000368439 NFKBIZQ9BYH8 718 aa21.06■□□□□ 0.96
CKS1B-203ENST00000368439 POLR3FQ9H1D9 316 aaPredicted RBP21.06■□□□□ 0.96
CKS1B-203ENST00000368439 FAM105AQ9NUU6 356 aa21.06■□□□□ 0.96
CKS1B-203ENST00000368439 TCF20Q9UGU0 1960 aaKnown RBP21.05■□□□□ 0.96
CKS1B-203ENST00000368439 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.05■□□□□ 0.96
CKS1B-203ENST00000368439 PP2D1A8MPX8 630 aa21.05■□□□□ 0.96
CKS1B-203ENST00000368439 MBTD1Q05BQ5 628 aa21.05■□□□□ 0.96
CKS1B-203ENST00000368439 TFDP1Q14186 410 aa21.05■□□□□ 0.96
CKS1B-203ENST00000368439 COL19A1Q14993 1142 aa21.05■□□□□ 0.96
CKS1B-203ENST00000368439 AMHR2Q16671 573 aa21.05■□□□□ 0.96
CKS1B-203ENST00000368439 TCEAL5Q5H9L2 206 aa21.05■□□□□ 0.96
CKS1B-203ENST00000368439 PADI6Q6TGC4 694 aa21.05■□□□□ 0.96
CKS1B-203ENST00000368439 DTHD1Q6ZMT9 781 aa21.05■□□□□ 0.96
CKS1B-203ENST00000368439 COLGALT1Q8NBJ5 622 aa21.05■□□□□ 0.96
CKS1B-203ENST00000368439 RNF169Q8NCN4 708 aa21.05■□□□□ 0.96
CKS1B-203ENST00000368439 HLA-CQ95604 372 aa21.05■□□□□ 0.96
CKS1B-203ENST00000368439 NSUN3Q9H649 340 aaKnown RBP21.05■□□□□ 0.96
CKS1B-203ENST00000368439 MEIS3P2A8K0S8 358 aa21.04■□□□□ 0.96
CKS1B-203ENST00000368439 TSPAN1O60635 241 aa21.04■□□□□ 0.96
CKS1B-203ENST00000368439 CYP11B2P19099 503 aa21.04■□□□□ 0.96
CKS1B-203ENST00000368439 CDC25AP30304 524 aa21.04■□□□□ 0.96
CKS1B-203ENST00000368439 PCBP1Q15365 356 aaKnown RBP eCLIP21.04■□□□□ 0.96
CKS1B-203ENST00000368439 MAEAQ7L5Y9 396 aa21.04■□□□□ 0.96
CKS1B-203ENST00000368439 MCPH1Q8NEM0 835 aa21.04■□□□□ 0.96
CKS1B-203ENST00000368439 HELQQ8TDG4 1101 aa21.04■□□□□ 0.96
CKS1B-203ENST00000368439 SNX29Q8TEQ0 813 aa21.04■□□□□ 0.96
CKS1B-203ENST00000368439 LPPQ93052 612 aa21.04■□□□□ 0.96
CKS1B-203ENST00000368439 RAB34Q9BZG1 259 aa21.04■□□□□ 0.96
CKS1B-203ENST00000368439 KIAA1024Q9UPX6 916 aa21.04■□□□□ 0.96
CKS1B-203ENST00000368439 STK24Q9Y6E0 443 aa21.04■□□□□ 0.96
CKS1B-203ENST00000368439 SKIP12755 728 aa21.03■□□□□ 0.96
CKS1B-203ENST00000368439 RAB27AP51159 221 aa21.03■□□□□ 0.96
CKS1B-203ENST00000368439 MRPL10Q7Z7H8 261 aaKnown RBP21.03■□□□□ 0.96
CKS1B-203ENST00000368439 LRRC43Q8N309 656 aa21.03■□□□□ 0.96
CKS1B-203ENST00000368439 POF1BQ8WVV4 589 aa21.03■□□□□ 0.96
CKS1B-203ENST00000368439 BSNDQ8WZ55 320 aa21.03■□□□□ 0.96
CKS1B-203ENST00000368439 INTS4Q96HW7 963 aaKnown RBP21.03■□□□□ 0.96
CKS1B-203ENST00000368439 DDX19AQ9NUU7 478 aaKnown RBP21.03■□□□□ 0.96
CKS1B-203ENST00000368439 PCDHB2Q9Y5E7 798 aa21.03■□□□□ 0.96
CKS1B-203ENST00000368439 PCDHB12Q9Y5F1 795 aa21.03■□□□□ 0.96
CKS1B-203ENST00000368439 TTC28Q96AY4 2481 aa21.03■□□□□ 0.96
CKS1B-203ENST00000368439 ARHGEF35A5YM69 484 aa21.02■□□□□ 0.96
CKS1B-203ENST00000368439 BMP1P13497 986 aa21.02■□□□□ 0.96
CKS1B-203ENST00000368439 LAG3P18627 525 aa21.02■□□□□ 0.96
CKS1B-203ENST00000368439 IRS1P35568 1242 aa21.02■□□□□ 0.96
CKS1B-203ENST00000368439 KCNQ1P51787 676 aa21.02■□□□□ 0.96
CKS1B-203ENST00000368439 SPOUT1Q5T280 376 aaKnown RBP21.02■□□□□ 0.96
CKS1B-203ENST00000368439 ARL6IP4Q66PJ3 421 aaKnown RBP21.02■□□□□ 0.96
CKS1B-203ENST00000368439 BRAPQ7Z569 592 aa21.02■□□□□ 0.96
CKS1B-203ENST00000368439 ABI1Q8IZP0 508 aa21.02■□□□□ 0.96
CKS1B-203ENST00000368439 BHMT2Q9H2M3 363 aa21.02■□□□□ 0.96
CKS1B-203ENST00000368439 UBE2ZQ9H832 354 aaPredicted RBP21.02■□□□□ 0.96
CKS1B-203ENST00000368439 AAASQ9NRG9 546 aa21.02■□□□□ 0.96
CKS1B-203ENST00000368439 MUC3AQ02505 3323 aa21.02■□□□□ 0.96
CKS1B-203ENST00000368439 E9PMD0 336 aa21.01■□□□□ 0.95
CKS1B-203ENST00000368439 INO80B-WBP1J3KQ70 363 aa21.01■□□□□ 0.95
CKS1B-203ENST00000368439 K7ELQ4 463 aaPredicted RBP21.01■□□□□ 0.95
CKS1B-203ENST00000368439 OFD1O75665 1012 aa21.01■□□□□ 0.95
CKS1B-203ENST00000368439 FGF18O76093 207 aa21.01■□□□□ 0.95
CKS1B-203ENST00000368439 AXLP30530 894 aa21.01■□□□□ 0.95
CKS1B-203ENST00000368439 LONRF3Q496Y0 759 aa21.01■□□□□ 0.95
CKS1B-203ENST00000368439 HYIQ5T013 277 aa21.01■□□□□ 0.95
CKS1B-203ENST00000368439 KRT79Q5XKE5 535 aa21.01■□□□□ 0.95
CKS1B-203ENST00000368439 CDCA2Q69YH5 1023 aaPredicted RBP21.01■□□□□ 0.95
CKS1B-203ENST00000368439 AGMOQ6ZNB7 445 aa21.01■□□□□ 0.95
CKS1B-203ENST00000368439 KCNK18Q7Z418 384 aa21.01■□□□□ 0.95
CKS1B-203ENST00000368439 SMG8Q8ND04 991 aaKnown RBP21.01■□□□□ 0.95
CKS1B-203ENST00000368439 B4GALT5O43286 388 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 ERLIN2O94905 339 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 EYA4O95677 639 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 ARF4P18085 180 aaPredicted RBP21■□□□□ 0.95
CKS1B-203ENST00000368439 PDCP20941 246 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 SYT1P21579 422 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 PLCB3Q01970 1234 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 UBE3AQ05086 875 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 HYAL1Q12794 435 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 CSPP1Q1MSJ5 1256 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 AAK1Q2M2I8 961 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 KCNT2Q6UVM3 1135 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 RSPH1Q8WYR4 309 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 SYMPKQ92797 1274 aaKnown RBP21■□□□□ 0.95
CKS1B-203ENST00000368439 SNX21Q969T3 373 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 CPB2Q96IY4 423 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 PNMA5Q96PV4 448 aa21■□□□□ 0.95
CKS1B-203ENST00000368439 EIF2AQ9BY44 585 aaKnown RBP21■□□□□ 0.95
CKS1B-203ENST00000368439 VPS37CA5D8V6 355 aaPredicted RBP20.99■□□□□ 0.95
CKS1B-203ENST00000368439 VWA3AA6NCI4 1184 aa20.99■□□□□ 0.95
CKS1B-203ENST00000368439 NCLP19338 710 aaKnown RBP20.99■□□□□ 0.95
CKS1B-203ENST00000368439 PBX3P40426 434 aa20.99■□□□□ 0.95
CKS1B-203ENST00000368439 CTC1Q2NKJ3 1217 aa20.99■□□□□ 0.95
CKS1B-203ENST00000368439 PPP4R3CPQ6ZMV5 832 aa20.99■□□□□ 0.95
CKS1B-203ENST00000368439 THNSL1Q8IYQ7 743 aa20.99■□□□□ 0.95
CKS1B-203ENST00000368439 PGBD4Q96DM1 585 aa20.99■□□□□ 0.95
CKS1B-203ENST00000368439 PABPC5Q96DU9 382 aaKnown RBP20.99■□□□□ 0.95
CKS1B-203ENST00000368439 CCDC51Q96ER9 411 aa20.99■□□□□ 0.95
CKS1B-203ENST00000368439 MRPL9Q9BYD2 267 aaKnown RBP20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms