RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 PEX3P56589 373 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 TGFB2P61812 414 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 ZSCAN26Q16670 478 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 DALRD3Q5D0E6 543 aaKnown RBP22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 NSMFQ6X4W1 530 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 TRMT1LQ7Z2T5 733 aaKnown RBP22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 KLHL7Q8IXQ5 586 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 CASKIN2Q8WXE0 1202 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 IFT81Q8WYA0 676 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 WNK4Q96J92 1243 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 OSGEPQ9NPF4 335 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 PNMA2Q9UL42 364 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 SLC16A4O15374 487 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 LRRN2O75325 713 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 TNFAIP3P21580 790 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 PAK2Q13177 524 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 ARHGEF16Q5VV41 709 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 ALS2CLQ60I27 953 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 SAMD7Q7Z3H4 446 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 GOLGA6L1Q8N7Z2 621 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 HES6Q96HZ4 224 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 SH3GL2Q99962 352 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 UBE2TQ9NPD8 197 aaPredicted RBP22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 BCS1LQ9Y276 419 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 RIPK3Q9Y572 518 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 WDR64B1ANS9 1081 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 P4HA2O15460 535 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 FAM153BP0C7A2 387 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 RPS12P25398 132 aaKnown RBP22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 GCLMP48507 274 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 NCKAP1LP55160 1127 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 FAM153CQ494X1 144 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 EPC2Q52LR7 807 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 PLEKHO2Q8TD55 490 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 RFFLQ8WZ73 363 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 ATG4CQ96DT6 458 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 ANKEF1Q9NU02 776 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 FAM153AQ9UHL3 310 aa22.59■■□□□ 1.21
CCDC88B-203ENST00000359902 TESPA1A2RU30 521 aaPredicted RBP22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 PGRMC1O00264 195 aaKnown RBP22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 MAPK13O15264 365 aa22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 SFNP31947 248 aa22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 SNRPFP62306 86 aaKnown RBP22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 KRT76Q01546 638 aa22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 CETN1Q12798 172 aa22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 TRADDQ15628 312 aa22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 XKR9Q5GH70 373 aa22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 NBPF12Q5TAG4 269 aaPredicted RBP22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 PLA2G4FQ68DD2 849 aa22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 PALB2Q86YC2 1186 aa22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 ARHGEF19Q8IW93 802 aa22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 RASGEF1CQ8N431 466 aa22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 TAS2R14Q9NYV8 317 aa22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 HACL1Q9UJ83 578 aa22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 IGSF9BQ9UPX0 1349 aa22.58■■□□□ 1.21
CCDC88B-203ENST00000359902 NFKBIEO00221 500 aa22.58■■□□□ 1.2
CCDC88B-203ENST00000359902 BUB1BO60566 1050 aaPredicted RBP22.58■■□□□ 1.2
CCDC88B-203ENST00000359902 ABCB4P21439 1286 aa22.58■■□□□ 1.2
CCDC88B-203ENST00000359902 PPATQ06203 517 aa22.58■■□□□ 1.2
CCDC88B-203ENST00000359902 BAATQ14032 418 aaPredicted RBP22.58■■□□□ 1.2
CCDC88B-203ENST00000359902 CTNNBL1Q8WYA6 563 aaPredicted RBP22.58■■□□□ 1.2
CCDC88B-203ENST00000359902 CALR3Q96L12 384 aaKnown RBP22.58■■□□□ 1.2
CCDC88B-203ENST00000359902 FDX1P10109 184 aa22.57■■□□□ 1.2
CCDC88B-203ENST00000359902 BAG6P46379 1132 aa22.57■■□□□ 1.2
CCDC88B-203ENST00000359902 FAM102BQ5T8I3 360 aa22.57■■□□□ 1.2
CCDC88B-203ENST00000359902 IWS1Q96ST2 819 aa22.57■■□□□ 1.2
CCDC88B-203ENST00000359902 AGPAT1Q99943 283 aa22.57■■□□□ 1.2
CCDC88B-203ENST00000359902 AP1M1Q9BXS5 423 aa22.57■■□□□ 1.2
CCDC88B-203ENST00000359902 NOC2LQ9Y3T9 749 aaKnown RBP22.57■■□□□ 1.2
CCDC88B-203ENST00000359902 BACE1P56817 501 aa22.57■■□□□ 1.2
CCDC88B-203ENST00000359902 TBC1D10BQ4KMP7 808 aaPredicted RBP22.57■■□□□ 1.2
CCDC88B-203ENST00000359902 VSIG10LQ86VR7 867 aa22.57■■□□□ 1.2
CCDC88B-203ENST00000359902 MICALL2Q8IY33 904 aa22.57■■□□□ 1.2
CCDC88B-203ENST00000359902 RNF146Q9NTX7 359 aa22.57■■□□□ 1.2
CCDC88B-203ENST00000359902 AMFRQ9UKV5 643 aa22.57■■□□□ 1.2
CCDC88B-203ENST00000359902 ANO5Q75V66 913 aa22.56■■□□□ 1.2
CCDC88B-203ENST00000359902 ARHGEF26Q96DR7 871 aa22.56■■□□□ 1.2
CCDC88B-203ENST00000359902 THAP2Q9H0W7 228 aa22.56■■□□□ 1.2
CCDC88B-203ENST00000359902 TCEAL9Q9UHQ7 104 aa22.56■■□□□ 1.2
CCDC88B-203ENST00000359902 HSF2BPO75031 334 aa22.56■■□□□ 1.2
CCDC88B-203ENST00000359902 RPS6KA5O75582 802 aa22.56■■□□□ 1.2
CCDC88B-203ENST00000359902 GMPSP49915 693 aaPredicted RBP22.56■■□□□ 1.2
CCDC88B-203ENST00000359902 MCCD1P59942 119 aaPredicted RBP22.56■■□□□ 1.2
CCDC88B-203ENST00000359902 XRRA1Q6P2D8 792 aa22.56■■□□□ 1.2
CCDC88B-203ENST00000359902 LEKR1Q6ZMV7 388 aa22.56■■□□□ 1.2
CCDC88B-203ENST00000359902 SLC20A1Q8WUM9 679 aa22.56■■□□□ 1.2
CCDC88B-203ENST00000359902 VTI1AQ96AJ9 217 aa22.56■■□□□ 1.2
CCDC88B-203ENST00000359902 MOV10L1Q9BXT6 1211 aaKnown RBP22.56■■□□□ 1.2
CCDC88B-203ENST00000359902 SEPT11Q9NVA2 429 aaKnown RBP22.56■■□□□ 1.2
CCDC88B-203ENST00000359902 ANKRD62A6NC57 917 aa22.55■■□□□ 1.2
CCDC88B-203ENST00000359902 GOLGA6CA6NDK9 693 aa22.55■■□□□ 1.2
CCDC88B-203ENST00000359902 OPA1O60313 960 aa22.55■■□□□ 1.2
CCDC88B-203ENST00000359902 ADRB2P07550 413 aa22.55■■□□□ 1.2
CCDC88B-203ENST00000359902 GOLGA6DP0CG33 693 aa22.55■■□□□ 1.2
CCDC88B-203ENST00000359902 ADSSP30520 456 aa22.55■■□□□ 1.2
CCDC88B-203ENST00000359902 SLC17A8Q8NDX2 589 aa22.55■■□□□ 1.2
CCDC88B-203ENST00000359902 TMEM161BQ8NDZ6 487 aa22.55■■□□□ 1.2
CCDC88B-203ENST00000359902 TMEM117Q9H0C3 514 aa22.55■■□□□ 1.2
CCDC88B-203ENST00000359902 GOLGA6AQ9NYA3 693 aa22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms