RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 TBX3O15119 743 aa16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 ZNF623O75123 536 aa16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 CTDNEP1O95476 244 aa16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 HOXB8P17481 243 aaPredicted RBP16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 RAB27AP51159 221 aa16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 EARS2Q5JPH6 523 aaKnown RBP16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 TRIM67Q6ZTA4 783 aa16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 BMP8AQ7Z5Y6 402 aa16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 TMEM173Q86WV6 379 aaPredicted RBP16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 CASP10Q92851 521 aa16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 TMEM169Q96HH4 297 aa16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 CEP170P1Q96L14 293 aa16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 DHX33Q9H6R0 707 aaKnown RBP16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 TBC1D13Q9NVG8 400 aa16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 PPME1Q9Y570 386 aa16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 HCFC2Q9Y5Z7 792 aa16.19■□□□□ 0.18
PRPF40A-201ENST00000354363 TMEM221A6NGB7 291 aa16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 M0R296 226 aa16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 CLASP2O75122 1294 aaKnown RBP16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 ZC3H11AO75152 810 aaKnown RBP eCLIP16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 EPHA7Q15375 998 aa16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 NOMO2Q5JPE7 1267 aa16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 GLB1LQ6UWU2 654 aa16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 POTEDQ86YR6 584 aa16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 C4orf19Q8IY42 314 aa16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 SLC7A3Q8WY07 619 aa16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 TMEM143Q96AN5 459 aa16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 NAP1L4Q99733 375 aaKnown RBP16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 LXNQ9BS40 222 aa16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 ZBP1Q9H171 429 aa16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 NRDE2Q9H7Z3 1164 aa16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 ORC3Q9UBD5 711 aaPredicted RBP16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 INPP5FQ9Y2H2 1132 aa16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 PIEZO1Q92508 2521 aa16.18■□□□□ 0.18
PRPF40A-201ENST00000354363 FAM205CA6NFA0 338 aa16.17■□□□□ 0.18
PRPF40A-201ENST00000354363 OFD1O75665 1012 aa16.17■□□□□ 0.18
PRPF40A-201ENST00000354363 CXCL14O95715 111 aa16.17■□□□□ 0.18
PRPF40A-201ENST00000354363 POLGP54098 1239 aaPredicted RBP16.17■□□□□ 0.18
PRPF40A-201ENST00000354363 EXOC8Q8IYI6 725 aa16.17■□□□□ 0.18
PRPF40A-201ENST00000354363 VPS52Q8N1B4 723 aa16.17■□□□□ 0.18
PRPF40A-201ENST00000354363 PRPF31Q8WWY3 499 aaKnown RBP16.17■□□□□ 0.18
PRPF40A-201ENST00000354363 MINDY3Q9H8M7 445 aa16.17■□□□□ 0.18
PRPF40A-201ENST00000354363 AGPAT5Q9NUQ2 364 aa16.17■□□□□ 0.18
PRPF40A-201ENST00000354363 RGL1Q9NZL6 768 aa16.17■□□□□ 0.18
PRPF40A-201ENST00000354363 CDH22Q9UJ99 828 aa16.17■□□□□ 0.18
PRPF40A-201ENST00000354363 ZDBF2Q9HCK1 2354 aa16.17■□□□□ 0.18
PRPF40A-201ENST00000354363 MARCH6O60337 910 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 GALTP07902 379 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 SRGAP2CP0DJJ0 459 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 YWHABP31946 246 aaKnown RBP16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 CA8P35219 290 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 RFC5P40937 340 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 AK2P54819 239 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 SPIRE1Q08AE8 756 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 BMS1Q14692 1282 aaKnown RBP16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 TPRNQ4KMQ1 711 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 NCAPH2Q6IBW4 605 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 SRGAP1Q7Z6B7 1085 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 BCL7CQ8WUZ0 217 aaPredicted RBP16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 PSPC1Q8WXF1 523 aaKnown RBP16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 AUTS2Q8WXX7 1259 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 IGSF21Q96ID5 467 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 DYDC2Q96IM9 177 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 BMP2KQ9NSY1 1161 aaPredicted RBP16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 PCDHB2Q9Y5E7 798 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 C2orf16Q68DN1 1984 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 DENND4AQ7Z401 1863 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 CARNS1A5YM72 827 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 FDPSP14324 419 aaKnown RBP16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 ANAPC15P60006 121 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 NHLH1Q02575 133 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 LAMTOR4Q0VGL1 99 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 NR5A1Q13285 461 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 EMC2Q15006 297 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 AGMOQ6ZNB7 445 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 DDX53Q86TM3 631 aaKnown RBP16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 ALYREFQ86V81 257 aaKnown RBP16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 WASF1Q92558 559 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 TNFRSF25Q93038 417 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 PBXIP1Q96AQ6 731 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 PGBD4Q96DM1 585 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 DNAJB4Q9UDY4 337 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 IRAK3Q9Y616 596 aa16.16■□□□□ 0.18
PRPF40A-201ENST00000354363 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 ZBTB39O15060 712 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 GAS2O43903 313 aaKnown RBP16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 B4GALT3O60512 393 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 CTSAP10619 480 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 SP100P23497 879 aaPredicted RBP16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 HOXA11P31270 313 aaPredicted RBP16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 KRT2P35908 639 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 SLC11A1P49279 550 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 CYP4A11Q02928 519 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 RNASELQ05823 741 aaKnown RBP16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 ITIH3Q06033 890 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 SIGLEC14Q08ET2 396 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 CTTNQ14247 550 aaKnown RBP16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 ANKRD1Q15327 319 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 XKR9Q5GH70 373 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 OTUD6AQ7L8S5 288 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms