RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TMCC1O94876 653 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 UPP2O95045 317 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 RAP1GDS1P52306 607 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 SEPT2Q15019 361 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 COBLL1Q53SF7 1204 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 C6orf118Q5T5N4 469 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 EPM2AIP1Q7L775 607 aaPredicted RBP13.43□□□□□ -0.26
SDC3-201ENST00000336798 ECE2O60344 883 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 KRT37O76014 449 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 LDHAP00338 332 aaKnown RBP13.43□□□□□ -0.26
SDC3-201ENST00000336798 SPATA33Q96N06 139 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 CNOT10Q9H9A5 744 aaKnown RBP13.43□□□□□ -0.26
SDC3-201ENST00000336798 ALG13Q9NP73 1137 aaKnown RBP13.43□□□□□ -0.26
SDC3-201ENST00000336798 BLMP54132 1417 aaPredicted RBP13.43□□□□□ -0.26
SDC3-201ENST00000336798 BEND6Q5SZJ8 279 aaPredicted RBP13.43□□□□□ -0.26
SDC3-201ENST00000336798 FAM117BQ6P1L5 589 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 C16orf87Q6PH81 154 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 PGBD3Q8N328 593 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 ARMC2Q8NEN0 867 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 DHX35Q9H5Z1 703 aaKnown RBP13.43□□□□□ -0.26
SDC3-201ENST00000336798 TOPORSQ9NS56 1045 aaPredicted RBP13.43□□□□□ -0.26
SDC3-201ENST00000336798 IRF1P10914 325 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 JAK3P52333 1124 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 C1orf146Q5VVC0 180 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 PPP1R2P3Q6NXS1 205 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 VSTM4Q8IW00 320 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 SEPT12Q8IYM1 358 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 RTKN2Q8IZC4 609 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 BTN2A2Q8WVV5 523 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 DYRK4Q9NR20 520 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 CDV3Q9UKY7 258 aaKnown RBP13.43□□□□□ -0.26
SDC3-201ENST00000336798 KIF24Q5T7B8 1368 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 POTEB3A0JP26 581 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 POTECB2RU33 542 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 MAFGO15525 162 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 POTEBQ6S5H4 581 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 POLR3FQ9H1D9 316 aaPredicted RBP13.43□□□□□ -0.26
SDC3-201ENST00000336798 NEDD4P46934 1319 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 PHLPP2Q6ZVD8 1323 aa13.43□□□□□ -0.26
SDC3-201ENST00000336798 IKBKBO14920 756 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 SKIP12755 728 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 PRAMEP78395 509 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 SPARCL1Q14515 664 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 LRRC14Q15048 493 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 TTC23LQ6PF05 361 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 WDR75Q8IWA0 830 aaKnown RBP13.42□□□□□ -0.26
SDC3-201ENST00000336798 SCG3Q8WXD2 468 aaKnown RBP13.42□□□□□ -0.26
SDC3-201ENST00000336798 BTBD6Q96KE9 485 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 EPAS1Q99814 870 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 PIM2Q9P1W9 311 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 ZFP69BQ9UJL9 534 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 NR3C1P04150 777 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 ABCD1P33897 745 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 MDM2Q00987 491 aaPredicted RBP13.42□□□□□ -0.26
SDC3-201ENST00000336798 MORF4L2Q15014 288 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 HLFQ16534 295 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 FASTKD1Q53R41 847 aaKnown RBP13.42□□□□□ -0.26
SDC3-201ENST00000336798 TMEM179Q6ZVK1 233 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 RNF181Q9P0P0 153 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 A8MXQ7 604 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 SEC24DO94855 1032 aaPredicted RBP13.42□□□□□ -0.26
SDC3-201ENST00000336798 KCNA2P16389 499 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 GRIK1P39086 918 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 ADCY2Q08462 1091 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 CASP8Q14790 479 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 GRAMD4Q6IC98 578 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 TTLL11Q8NHH1 800 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 SENP1Q9P0U3 644 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 FARP1Q9Y4F1 1045 aaPredicted RBP13.42□□□□□ -0.26
SDC3-201ENST00000336798 hCG_1984214I3L0E3 225 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 GNA15P30679 374 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 PMS1P54277 932 aaKnown RBP13.42□□□□□ -0.26
SDC3-201ENST00000336798 GPSM2P81274 684 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 TNFAIP2Q03169 654 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 GPS1Q13098 491 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 EFTUD2Q15029 972 aaKnown RBP eCLIP13.42□□□□□ -0.26
SDC3-201ENST00000336798 ZNF713Q8N859 430 aaPredicted RBP13.42□□□□□ -0.26
SDC3-201ENST00000336798 MASTLQ96GX5 879 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 TUBB6Q9BUF5 446 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 CHCHD3Q9NX63 227 aaKnown RBP13.42□□□□□ -0.26
SDC3-201ENST00000336798 POTEFA5A3E0 1075 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 LRRC53A6NM62 1247 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 ZRANB2O95218 330 aaKnown RBP eCLIP13.42□□□□□ -0.26
SDC3-201ENST00000336798 POTEIP0CG38 1075 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 PDCLQ13371 301 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 POTEGQ6S5H5 508 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 POTEEQ6S8J3 1075 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 ADCK2Q7Z695 626 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 CENPKQ9BS16 269 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 TEX12Q9BXU0 123 aa13.42□□□□□ -0.26
SDC3-201ENST00000336798 RNF103-CHMP3A0A140T963 221 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 C11orf74Q86VG3 221 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 PIGBQ92521 554 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 MAST1Q9Y2H9 1570 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 E2F8A0AVK6 867 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 COPB2P35606 906 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 MCAMP43121 646 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 HEATR6Q6AI08 1181 aaKnown RBP13.41□□□□□ -0.26
SDC3-201ENST00000336798 AIPL1Q9NZN9 384 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 BIVM-ERCC5R4GMW8 1640 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms