RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TBX2Q13207 712 aaPredicted RBP16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 TFDP1Q14186 410 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 MFSD10Q14728 455 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 MARCH8Q5T0T0 291 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 SPECC1LQ69YQ0 1117 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 MTHFD1LQ6UB35 978 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 SYCP3Q8IZU3 236 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 KLHDC9Q8NEP7 349 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 DEPTORQ8TB45 409 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 KIFC3Q9BVG8 833 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 CCDC113Q9H0I3 377 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 SPC25Q9HBM1 224 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 SUCLA2Q9P2R7 463 aaPredicted RBP16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 STYXL1Q9Y6J8 313 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 SIP14410 1827 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 MYH11P35749 1972 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 KIAA0391O15091 583 aaKnown RBP16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 TEX33O43247 280 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 MSCO60682 206 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 AKAP3O75969 853 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 SMIM10L2AP0DMW4 78 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 SMIM10L2BP0DMW5 78 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 ELNP15502 786 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 GARTP22102 1010 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 KLRC1P26715 233 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 TMOD1P28289 359 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 HSP90AA2PQ14568 343 aaPredicted RBP16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 KIAA0753Q2KHM9 967 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 VWA3BQ502W6 1294 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 EFCAB12Q6NXP0 572 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 KSR1Q8IVT5 923 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 ZNF710Q8N1W2 664 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 RAET1EQ8TD07 263 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 TRAPPC12Q8WVT3 735 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 FBXL18Q96ME1 805 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 ERGIC2Q96RQ1 377 aa16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 MTG1Q9BT17 334 aaPredicted RBP16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 ARMCX3Q9UH62 379 aaPredicted RBP16.35■□□□□ 0.21
CCDC88C-202ENST00000334448 LRRIQ4A6NIV6 560 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 ZEB2O60315 1214 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 EPB41P11171 864 aaKnown RBP16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 CNGA1P29973 690 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 PSMC2P35998 433 aaKnown RBP16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 CDC42EP1Q00587 391 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 CCDC40Q4G0X9 1142 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 CCSAPQ6IQ19 270 aaPredicted RBP16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 SLC39A4Q6P5W5 647 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 ZPBP2Q6X784 338 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 ZBTB8OSQ8IWT0 167 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 LRRC71Q8N4P6 559 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 LMBR1Q8WVP7 490 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 IQCDQ96DY2 449 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 EEF2KMTQ96G04 330 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 NOC4LQ9BVI4 516 aaKnown RBP16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 VPS16Q9H269 839 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 SUGCTQ9HAC7 445 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 WBP1LQ9NX94 342 aa16.34■□□□□ 0.21
CCDC88C-202ENST00000334448 SMIM35A0A1B0GVV1 85 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 MYADML2A6NDP7 307 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 C6orf222P0C671 652 aaPredicted RBP16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 CCND3P30281 292 aaPredicted RBP16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 ADSSP30520 456 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 CLCN3P51790 818 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 PTENP60484 403 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 BEX3Q00994 111 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 STRN3Q13033 797 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 TRIM14Q14142 442 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 FAM187BQ17R55 369 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 FIGNQ5HY92 759 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 TMC6Q7Z403 805 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 ZNF410Q86VK4 478 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 DRC7Q8IY82 874 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 FAM186BQ8IYM0 893 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 XXYLT1Q8NBI6 393 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 SPC24Q8NBT2 197 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 IKZF4Q9H2S9 585 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 NDST4Q9H3R1 872 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 FZD8Q9H461 694 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 XPNPEP3Q9NQH7 507 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 DDX20Q9UHI6 824 aaKnown RBP16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 FRMD4BQ9Y2L6 1034 aa16.33■□□□□ 0.2
CCDC88C-202ENST00000334448 K7ERI5 159 aa16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 HNRNPDLO14979 420 aaKnown RBP16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 CLIC2O15247 247 aa16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 PTMAP06454 111 aaKnown RBP16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 MYL3P08590 195 aa16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 CASP4P49662 377 aa16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 IRX5P78411 483 aaPredicted RBP16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 UBXN1Q04323 297 aa16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 GNASQ5JWF2 1037 aa16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 FKBP15Q5T1M5 1219 aa16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 ARMCX5Q6P1M9 558 aa16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 SESTD1Q86VW0 696 aa16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 KIAA0319LQ8IZA0 1049 aa16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 RNF149Q8NC42 400 aa16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 CCDC150Q8NCX0 1101 aa16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 TRIM44Q96DX7 344 aaPredicted RBP16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 MAP7D2Q96T17 732 aa16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 CBWD1Q9BRT8 395 aa16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 HSPBP1Q9NZL4 362 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms