RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 TLL1O43897 1013 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 ERLIN2O94905 339 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 GJB5O95377 273 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 FXR1P51114 621 aaKnown RBP eCLIP17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 PEX3P56589 373 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 DMP1Q13316 513 aaPredicted RBP17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 CDCA2Q69YH5 1023 aaPredicted RBP17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 ADALQ6DHV7 355 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 FAM43BQ6ZT52 329 aaPredicted RBP17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 TOP1MTQ969P6 601 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 C2orf40Q9H1Z8 148 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 RGS18Q9NS28 235 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 C1orf112Q9NSG2 853 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 MSRAQ9UJ68 235 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 CCDC169A6NNP5 214 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 POLR2DO15514 142 aaKnown RBP17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 MYOGP15173 224 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 LIG1P18858 919 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 DNAJB2P25686 324 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 SARSP49591 514 aaKnown RBP17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 RAB30Q15771 203 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 E2F4Q16254 413 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 IPO9Q96P70 1041 aaKnown RBP17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 AGPAT5Q9NUQ2 364 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 ODF2LQ9ULJ1 636 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 YBX2Q9Y2T7 364 aaKnown RBP17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 PCDHA11Q9Y5I1 949 aa17.56■□□□□ 0.4
CCDC28A-201ENST00000332797 ADGRA3Q8IWK6 1321 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 TSPAN1O60635 241 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 TBCAO75347 108 aaKnown RBP17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 FAM13AO94988 1023 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 PLS3P13797 630 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 NPTX2P47972 431 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 GIT2Q14161 759 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 TWF2Q6IBS0 349 aaKnown RBP17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 SLC24A5Q71RS6 500 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 DYMQ7RTS9 669 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 IQUBQ8NA54 791 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 ZHX3Q9H4I2 956 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 C17orf75Q9HAS0 396 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 KMT5AQ9NQR1 393 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 CHST12Q9NRB3 414 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 DACT1Q9NYF0 836 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 KCNH3Q9ULD8 1083 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 LRFN2Q9ULH4 789 aa17.55■□□□□ 0.4
CCDC28A-201ENST00000332797 A0A1B0GVL5 298 aa17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 MYMKA6NI61 221 aa17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 C9IYK1 514 aa17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 PFKFB1P16118 471 aa17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 CMA1P23946 247 aa17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 NCBP1Q09161 790 aaKnown RBP17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 PCBP1Q15365 356 aaKnown RBP eCLIP17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 AMHR2Q16671 573 aa17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 NPAS4Q8IUM7 802 aa17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 TIFAQ96CG3 184 aa17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 CPB2Q96IY4 423 aa17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 RAD9AQ99638 391 aa17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 NKX2-4Q9H2Z4 354 aa17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 CUEDC2Q9H467 287 aa17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 PRMT7Q9NVM4 692 aaPredicted RBP17.54■□□□□ 0.4
CCDC28A-201ENST00000332797 SLC16A4O15374 487 aa17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 B4GALT5O43286 388 aa17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 PRKCBP05771 671 aa17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 STAG3L1P0CL83 205 aa17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 EFNA5P52803 228 aa17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 MAPK6Q16659 721 aa17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 TMEM132AQ24JP5 1023 aa17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 DDX12PQ92771 950 aa17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 STAMQ92783 540 aa17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 YME1L1Q96TA2 773 aa17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 PYM1Q9BRP8 204 aaKnown RBP17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 CCDC113Q9H0I3 377 aa17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 PARVGQ9HBI0 331 aa17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 LARSQ9P2J5 1176 aaKnown RBP17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 MYH11P35749 1972 aa17.53■□□□□ 0.4
CCDC28A-201ENST00000332797 A0A1W2PQ27 194 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 A0A1W2PQ64 194 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 A0A1W2PQD8 194 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 LCHNA4D1U4 455 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 CA3P07451 260 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 ARF4P18085 180 aaPredicted RBP17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 AXLP30530 894 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 HOXA11P31270 313 aaPredicted RBP17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 ZNF131P52739 623 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 SMTNP53814 917 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 NOTUMQ6P988 496 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 PPP4R3CPQ6ZMV5 832 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 MYCT1Q8N699 235 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 FSIP1Q8NA03 581 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 RNF169Q8NCN4 708 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 SPIRE2Q8WWL2 714 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 MRPS27Q92552 414 aaKnown RBP17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 PRIMPOLQ96LW4 560 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 TNMDQ9H2S6 317 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 FZD8Q9H461 694 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 RNF216Q9NWF9 866 aaPredicted RBP17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 INSL6Q9Y581 213 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 PCDHB7Q9Y5E2 793 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 TTC3P53804 2025 aa17.52■□□□□ 0.4
CCDC28A-201ENST00000332797 PHLPP2Q6ZVD8 1323 aa17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms