RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TMEM161BQ8NDZ6 487 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 NOC3LQ8WTT2 800 aaKnown RBP11.01□□□□□ -0.65
HMGB3-201ENST00000325307 BICD1Q96G01 975 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 GBP3Q9H0R5 595 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 IKZF4Q9H2S9 585 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 KCTD10Q9H3F6 313 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 TYW1Q9NV66 732 aaKnown RBP11.01□□□□□ -0.65
HMGB3-201ENST00000325307 UBE4BO95155 1302 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 COL1A2P08123 1366 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 KCNJ18B7U540 433 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 H0YCG3 227 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 CLIC2O15247 247 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 GJB1P08034 283 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 HOXD13P35453 343 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 NAMPTP43490 491 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 UBASH3AP57075 661 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 FKBP3Q00688 224 aaKnown RBP11.01□□□□□ -0.65
HMGB3-201ENST00000325307 LAMTOR4Q0VGL1 99 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 KCNJ12Q14500 433 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 MXD4Q14582 209 aaPredicted RBP11.01□□□□□ -0.65
HMGB3-201ENST00000325307 BMT2Q1RMZ1 405 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 SLC9C1Q4G0N8 1177 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 FAM47CQ5HY64 1035 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 MTHFD1LQ6UB35 978 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 RNF180Q86T96 592 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 FAM114A1Q8IWE2 563 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 KIAA1524Q8TCG1 905 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 LMBR1Q8WVP7 490 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 UPF3AQ9H1J1 476 aaKnown RBP11.01□□□□□ -0.65
HMGB3-201ENST00000325307 THAP9Q9H5L6 903 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 TMEM206Q9H813 350 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 SPTLC3Q9NUV7 552 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 EXOC7Q9UPT5 735 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 ARID2Q68CP9 1835 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 NRCAMQ92823 1304 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 PDXKO00764 312 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 ZNF18P17022 549 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 NR2F2P24468 414 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 SPAG1Q07617 926 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 STRN3Q13033 797 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 ADAM9Q13443 819 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 ARID5BQ14865 1188 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 KCNA10Q16322 511 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 PPP4R3CPQ6ZMV5 832 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 CCDC186Q7Z3E2 898 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 RNF149Q8NC42 400 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 MRFAP1L1Q96HT8 127 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 FAM49AQ9H0Q0 323 aaPredicted RBP11□□□□□ -0.65
HMGB3-201ENST00000325307 TBX20Q9UMR3 447 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 PTPN22Q9Y2R2 807 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 MSCO60682 206 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 GTF2BQ00403 316 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 MKRN4PQ13434 485 aaPredicted RBP11□□□□□ -0.65
HMGB3-201ENST00000325307 CAPSQ13938 189 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 CCDC40Q4G0X9 1142 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 CDKAL1Q5VV42 579 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 NFRKBQ6P4R8 1299 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 ADGRA3Q8IWK6 1321 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 IGKV6-21A0A0C4DH24 114 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 K7ERI5 159 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 CETN3O15182 167 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 ADAMTS4O75173 837 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 PPP1R37O75864 691 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 ASGR1P07306 291 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 RPL13P26373 211 aaKnown RBP11□□□□□ -0.65
HMGB3-201ENST00000325307 MTIF2P46199 727 aaKnown RBP11□□□□□ -0.65
HMGB3-201ENST00000325307 TFDP1Q14186 410 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 ZCWPW2Q504Y3 356 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 CEP135Q66GS9 1140 aa11□□□□□ -0.65
HMGB3-201ENST00000325307 CNOT6LQ96LI5 555 aaKnown RBP11□□□□□ -0.65
HMGB3-201ENST00000325307 NTPCRQ9BSD7 190 aaKnown RBP11□□□□□ -0.65
HMGB3-201ENST00000325307 HTTP42858 3142 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 VTNP04004 478 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 NR3C1P04150 777 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 TPM3P06753 285 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 CYP2J2P51589 502 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 EDRF1Q3B7T1 1238 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 TCP11X2Q5H9J9 407 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 ZBTB8OSQ8IWT0 167 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 PCSK9Q8NBP7 692 aaKnown RBP10.99□□□□□ -0.65
HMGB3-201ENST00000325307 XPO4Q9C0E2 1151 aaKnown RBP10.99□□□□□ -0.65
HMGB3-201ENST00000325307 ST6GALNAC4Q9H4F1 302 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 TAB2Q9NYJ8 693 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 HDAC6Q9UBN7 1215 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 GINS2Q9Y248 185 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 R3HCC1Q9Y3T6 440 aaKnown RBP10.99□□□□□ -0.65
HMGB3-201ENST00000325307 C17orf102A2RUQ5 167 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 HNRNPDLO14979 420 aaKnown RBP10.99□□□□□ -0.65
HMGB3-201ENST00000325307 CBFA2T2O43439 604 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 FILIP1LQ4L180 1135 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 GOLGA5Q8TBA6 731 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 CACTINQ8WUQ7 758 aaKnown RBP10.99□□□□□ -0.65
HMGB3-201ENST00000325307 STRA6Q9BX79 667 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 ARHGAP28Q9P2N2 729 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 TRAF3IP3Q9Y228 551 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 ZMYM2Q9UBW7 1377 aa10.99□□□□□ -0.65
HMGB3-201ENST00000325307 HAS3O00219 553 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 TGFB1I1O43294 461 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 GNAT1P11488 350 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 CYP2C9P11712 490 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms