RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 RHOT1Q8IXI2 618 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 HSPH1Q92598 858 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 ISCUQ9H1K1 167 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 TRIM33Q9UPN9 1127 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 PDS5AQ29RF7 1337 aaKnown RBP13.7□□□□□ -0.22
COL3A1-201ENST00000304636 WDR64B1ANS9 1081 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 UBAP1LF5GYI3 381 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 PHF2O75151 1096 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 PSAPP07602 524 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 HSPA2P54652 639 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 IL1RL1Q01638 556 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 PDIA2Q13087 525 aaKnown RBP13.7□□□□□ -0.22
COL3A1-201ENST00000304636 ZBED8Q8IZ13 594 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 ICA1LQ8NDH6 482 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 TTC1Q99614 292 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 TMEM260Q9NX78 707 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 SMG5Q9UPR3 1016 aaKnown RBP13.7□□□□□ -0.22
COL3A1-201ENST00000304636 CLEC11AQ9Y240 323 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 FIS1Q9Y3D6 152 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 ESYT2A0FGR8 921 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 KPNA7A9QM74 516 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 PPEF1O14829 653 aaPredicted RBP13.7□□□□□ -0.22
COL3A1-201ENST00000304636 TEDDM1Q5T9Z0 273 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 TTC7AQ9ULT0 858 aaPredicted RBP13.7□□□□□ -0.22
COL3A1-201ENST00000304636 ABCA6Q8N139 1617 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 GPS1Q13098 491 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 HLFQ16534 295 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 KDM7AQ6ZMT4 941 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 FAM160B2Q86V87 743 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 MSTO1Q9BUK6 570 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 CCT8L1PA6NM43 557 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 GOLGA8MH3BSY2 632 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 PDXKO00764 312 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 NOP14P78316 857 aaKnown RBP13.69□□□□□ -0.22
COL3A1-201ENST00000304636 ACAD11Q709F0 780 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 IP6K2Q9UHH9 426 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 INO80B-WBP1J3KQ70 363 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 SLC16A3O15427 465 aaKnown RBP13.69□□□□□ -0.22
COL3A1-201ENST00000304636 RAD51CO43502 376 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 RNF25Q96BH1 459 aaPredicted RBP13.69□□□□□ -0.22
COL3A1-201ENST00000304636 INO80BQ9C086 356 aaPredicted RBP13.69□□□□□ -0.22
COL3A1-201ENST00000304636 STRIP2Q9ULQ0 834 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 GSTA4O15217 222 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 CARSP49589 748 aaKnown RBP13.69□□□□□ -0.22
COL3A1-201ENST00000304636 TAF1BQ53T94 588 aaPredicted RBP13.69□□□□□ -0.22
COL3A1-201ENST00000304636 PIGBQ92521 554 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 KCNB2Q92953 911 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 DTNBP1Q96EV8 351 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 AGPAT1Q99943 283 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 CYP26B1Q9NR63 512 aa13.69□□□□□ -0.22
COL3A1-201ENST00000304636 RNF17Q9BXT8 1623 aaKnown RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 KITP10721 976 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 KLC1Q07866 573 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 NAB2Q15742 525 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 GRAMD4Q6IC98 578 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 SRBD1Q8N5C6 995 aaKnown RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 GIMAP8Q8ND71 665 aaPredicted RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 ATL2Q8NHH9 583 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 C1orf54Q8WWF1 131 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 CCDC124Q96CT7 223 aaKnown RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 ISCA1Q9BUE6 129 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 L1RE1Q9UN81 338 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 EIF4E1BA6NMX2 242 aaKnown RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 OATP04181 439 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 EPHB1P54762 984 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 SCARF1Q14162 830 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 PADI6Q6TGC4 694 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 TRAPPC11Q7Z392 1133 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 SGSM3Q96HU1 749 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 EIF2AQ9BY44 585 aaKnown RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 CDH16O75309 829 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 SEC24CP53992 1094 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 MTERF2Q49AM1 385 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 CC2D2BQ6DHV5 1058 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 KLC3Q6P597 504 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 USP38Q8NB14 1042 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 ZC3H15Q8WU90 426 aaKnown RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 C11orf70Q9BRQ4 267 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 TRIM51Q9BSJ1 452 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 ROPN1BQ9BZX4 212 aaPredicted RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 CPVLQ9H3G5 476 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 ROPN1Q9HAT0 212 aaPredicted RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 DDX56Q9NY93 547 aaKnown RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 POTEFA5A3E0 1075 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 CYP27B1O15528 508 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 RTN2O75298 545 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 POTEIP0CG38 1075 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 ITIH2P19823 946 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 JAK3P52333 1124 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 BIRC2Q13490 618 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 ZNF746Q6NUN9 644 aaPredicted RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 SLC30A9Q6PML9 568 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 POTEGQ6S5H5 508 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 POTEEQ6S8J3 1075 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 ENOSF1Q7L5Y1 443 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 SESTD1Q86VW0 696 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 NUDCD3Q8IVD9 361 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 HEXIM2Q96MH2 286 aaKnown RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 WWP1Q9H0M0 922 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 TRABDQ9H4I3 376 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms