RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 EEF1DP29692 281 aaKnown RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 ATP2C1P98194 919 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 RABL6Q3YEC7 729 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 ZNF790Q6PG37 636 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 C16orf89Q6UX73 402 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 SPATA21Q7Z572 469 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 HORMAD1Q86X24 394 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 MAB21L3Q8N8X9 362 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PNPT1Q8TCS8 783 aaKnown RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 HDAC11Q96DB2 347 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 CEP44Q9C0F1 390 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 ECT2Q9H8V3 914 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 DMAP1Q9NPF5 467 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 GID8Q9NWU2 228 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 TTC7AQ9ULT0 858 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PPLO60437 1756 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 NEURL1BA8MQ27 555 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 INHBAP08476 426 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 HOXC8P31273 242 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 NDUFA8P51970 172 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 KIF22Q14807 665 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 NR1I3Q14994 352 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 CYTH1Q15438 398 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 SLC18A3Q16572 532 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 GRAMD4Q6IC98 578 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 MIGA2Q7L4E1 593 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 ENGASEQ8NFI3 743 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 DNAJC9Q8WXX5 260 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PHKBQ93100 1093 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 ITPKCQ96DU7 683 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 SNF8Q96H20 258 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 NLRP4Q96MN2 994 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 FAM161BQ96MY7 647 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 SELENONQ9NZV5 590 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 ADD3Q9UEY8 706 aaKnown RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 MAPRE3Q9UPY8 281 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 CHD2O14647 1828 aaKnown RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PRR23D1E9PI22 279 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 TNPO2O14787 897 aaKnown RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PHF2O75151 1096 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 TBC1D8O95759 1140 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PAEPP09466 180 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PRR23D2P0DMB1 279 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 SRGNP10124 158 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 CCDC130P13994 396 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 HOXC9P31274 260 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PRMT9Q6P2P2 845 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 AADATQ8N5Z0 425 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 OR9Q1Q8NGQ5 310 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 TRERF1Q96PN7 1200 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 BICC1Q9H694 974 aaKnown RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 SLC52A2Q9HAB3 445 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 C17orf75Q9HAS0 396 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 TUBGCP4Q9UGJ1 667 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 DUOX1Q9NRD9 1551 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 KNL1Q8NG31 2342 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 VWA3AA6NCI4 1184 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 ZBTB22O15209 634 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 MARCKSP29966 332 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 AFMP43652 599 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 TNNI2P48788 182 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 CARSP49589 748 aaKnown RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 ARHGAP44Q17R89 818 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 TRPM8Q7Z2W7 1104 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 SPATA4Q8NEY3 305 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 ST13P5Q8NFI4 369 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 RDM1Q8NG50 284 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 XAGE3Q8WTP9 111 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PPP2R3CQ969Q6 453 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 RMDN1Q96DB5 314 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 CCDC126Q96EE4 140 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 GCNAQ96QF7 691 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 C7orf25Q9BPX7 421 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PITPNM3Q9BZ71 974 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PABPC3Q9H361 631 aaKnown RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 SYBUQ9NX95 663 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 STK38LQ9Y2H1 464 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 SYNCRIPO60506 623 aaKnown RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 ESRRAP11474 423 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 NR5A1Q13285 461 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 MTHFSDQ2M296 383 aaKnown RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 ZNF572Q7Z3I7 529 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 NFATC2IPQ8NCF5 419 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 ICA1LQ8NDH6 482 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 ARHGEF10LQ9HCE6 1279 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PNMA3Q9UL41 463 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PRG3Q9Y2Y8 225 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PCDHA13Q9Y5I0 950 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 CDY2AQ9Y6F7 541 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 CDY1Q9Y6F8 540 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PHRF1Q9P1Y6 1649 aaKnown RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 URB1O60287 2271 aaKnown RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 NCKAP5LQ9HCH0 1330 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 TCHHQ07283 1943 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 GSTA4O15217 222 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 MCM7P33993 719 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 MRPL28Q13084 256 aaKnown RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 DPCR1Q3MIW9 517 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 AAGABQ6PD74 315 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PRR23BQ6ZRT6 265 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms