RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 SLC39A14Q15043 492 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 MUM1Q2TAK8 710 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 DISP1Q96F81 1524 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 EIF4E1BA6NMX2 242 aaKnown RBP8.33□□□□□ -1.08
SCN9A-201ENST00000303354 EVI5O60447 810 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 PPP6R2O75170 966 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 ITGA4P13612 1032 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 ARID5BQ14865 1188 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 RNF10Q8N5U6 811 aaKnown RBP8.33□□□□□ -1.08
SCN9A-201ENST00000303354 OR6P1Q8NGX9 317 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 MRPL47Q9HD33 250 aaKnown RBP8.33□□□□□ -1.08
SCN9A-201ENST00000303354 ALG13Q9NP73 1137 aaKnown RBP8.33□□□□□ -1.08
SCN9A-201ENST00000303354 RRAGDQ9NQL2 400 aaPredicted RBP8.33□□□□□ -1.08
SCN9A-201ENST00000303354 KIF3CO14782 793 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 ECEL1O95672 775 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 FBXO28Q9NVF7 368 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 FBXO40Q9UH90 709 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 DAGLAQ9Y4D2 1042 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 MYO3BQ8WXR4 1341 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 NBPF26B4DH59 902 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 P4HBP07237 508 aaKnown RBP8.33□□□□□ -1.08
SCN9A-201ENST00000303354 COASYQ13057 564 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 NBPF9Q3BBW0 867 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 ANKMY2Q8IV38 441 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 CYTH2Q99418 400 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 TYW1Q9NV66 732 aaKnown RBP8.33□□□□□ -1.08
SCN9A-201ENST00000303354 CLTAP09496 248 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 WEE2P0C1S8 567 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 OCM2P0CE71 109 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 OCMP0CE72 109 aaPredicted RBP8.33□□□□□ -1.08
SCN9A-201ENST00000303354 PYROXD1Q8WU10 500 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 RAD54LQ92698 747 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 ATG4CQ96DT6 458 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 PI4K2AQ9BTU6 479 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 DAAM1Q9Y4D1 1078 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 RALAP11233 206 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 CENPAP49450 140 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 ATXN3P54252 364 aaPredicted RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 SLFN12LQ6IEE8 588 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 NBPF10Q6P3W6 841 aaKnown RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 NBPF15Q8N660 670 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 TEKT4Q8WW24 435 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 PARK7Q99497 189 aaKnown RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 AGO2Q9UKV8 859 aaKnown RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 ASB14A6NK59 587 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 ALDH1A1P00352 501 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 CYBBP04839 570 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 MAPK9P45984 424 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 RD3Q7Z3Z2 195 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 MAP3K6O95382 1288 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 MTMR3Q13615 1198 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 CLEC4GQ6UXB4 293 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 PPP1R13BQ96KQ4 1090 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 HNRNPCL2B2RXH8 293 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 HNRNPCL1O60812 293 aaKnown RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 ZC3H11AO75152 810 aaKnown RBP eCLIP8.32□□□□□ -1.082e-6■■■■□ 24.6
SCN9A-201ENST00000303354 TTC4O95801 387 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 SIRT2Q8IXJ6 389 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.32□□□□□ -1.081e-7■■■■□ 20
SCN9A-201ENST00000303354 KLHL14Q9P2G3 628 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 BIVM-ERCC5R4GMW8 1640 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 LDHAP00338 332 aaKnown RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 LRG1P02750 347 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 ATP1A3P13637 1013 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 RASSF2P50749 326 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 FKBP3Q00688 224 aaKnown RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 MB21D1Q8N884 522 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 GIMAP8Q8ND71 665 aaPredicted RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 FBXL13Q8NEE6 735 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 FAM136AQ96C01 138 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 TM6SF1Q9BZW5 370 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 USH1CQ9Y6N9 552 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 FAM205CA6NFA0 338 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 SART1O43290 800 aaKnown RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 PRCPP42785 496 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 EPC2Q52LR7 807 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 OPTNQ96CV9 577 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 PRMT6Q96LA8 375 aaPredicted RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 DNAJC7Q99615 494 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 ITIH6Q6UXX5 1313 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 TTLL13PA6NNM8 815 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 H3BRJ5 948 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 SCAMP3O14828 347 aaKnown RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 CYP26A1O43174 497 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 GCFC2P16383 781 aaKnown RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 AKT1P31749 480 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 ZC2HC1CQ53FD0 456 aaPredicted RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 PID1Q7Z2X4 250 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 TRIM59Q8IWR1 403 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 FBXO16Q8IX29 292 aaPredicted RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 ULK4Q96C45 1275 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 SRPRBQ9Y5M8 271 aaKnown RBP8.32□□□□□ -1.08
SCN9A-201ENST00000303354 PITPNM2Q9BZ72 1349 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 SREBF2Q12772 1141 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 PRAMEF19Q5SWL8 479 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 LLGL2Q6P1M3 1020 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 ABCC12Q96J65 1359 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 NDST4Q9H3R1 872 aa8.32□□□□□ -1.08
SCN9A-201ENST00000303354 MAP3K13O43283 966 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 TMPRSS15P98073 1019 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms