RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 SH3RF3Q8TEJ3 882 aaPredicted RBP11.73□□□□□ -0.53
ZNF558-201ENST00000301475 KRT35Q92764 455 aa11.73□□□□□ -0.53
ZNF558-201ENST00000301475 NAP1L3Q99457 506 aaPredicted RBP11.73□□□□□ -0.53
ZNF558-201ENST00000301475 STMN4Q9H169 189 aaPredicted RBP11.73□□□□□ -0.53
ZNF558-201ENST00000301475 ETNK1Q9HBU6 452 aa11.73□□□□□ -0.53
ZNF558-201ENST00000301475 MINPP1Q9UNW1 487 aa11.73□□□□□ -0.53
ZNF558-201ENST00000301475 KIAA1024Q9UPX6 916 aa11.73□□□□□ -0.53
ZNF558-201ENST00000301475 NIP7Q9Y221 180 aaKnown RBP eCLIP11.73□□□□□ -0.53
ZNF558-201ENST00000301475 COL14A1Q05707 1796 aaKnown RBP11.73□□□□□ -0.53
ZNF558-201ENST00000301475 TMEM253P0C7T8 217 aa11.73□□□□□ -0.53
ZNF558-201ENST00000301475 ZNF568Q3ZCX4 644 aa11.73□□□□□ -0.53
ZNF558-201ENST00000301475 SLC30A9Q6PML9 568 aa11.73□□□□□ -0.53
ZNF558-201ENST00000301475 PPP4R3CPQ6ZMV5 832 aa11.73□□□□□ -0.53
ZNF558-201ENST00000301475 CKAP2Q8WWK9 683 aa11.73□□□□□ -0.53
ZNF558-201ENST00000301475 SLC35C1Q96A29 364 aa11.73□□□□□ -0.53
ZNF558-201ENST00000301475 PIDD1Q9HB75 910 aa11.73□□□□□ -0.53
ZNF558-201ENST00000301475 BMP2KQ9NSY1 1161 aaPredicted RBP11.73□□□□□ -0.53
ZNF558-201ENST00000301475 MTRF1LQ9UGC7 380 aaKnown RBP11.73□□□□□ -0.53
ZNF558-201ENST00000301475 ARFGEF1Q9Y6D6 1849 aa11.73□□□□□ -0.53
ZNF558-201ENST00000301475 RARGP13631 454 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 KCNA4P22459 653 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 UBE2SQ16763 222 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 NBPF20Q3BBV1 942 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 ARSHQ5FYA8 562 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 CROCCP2Q86T23 111 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 ZNF444Q8N0Y2 327 aaPredicted RBP11.72□□□□□ -0.53
ZNF558-201ENST00000301475 SYT11Q9BT88 431 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 THAP2Q9H0W7 228 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 RNPEPL1Q9HAU8 725 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.72□□□□□ -0.53
ZNF558-201ENST00000301475 DIS3Q9Y2L1 958 aaKnown RBP11.72□□□□□ -0.53
ZNF558-201ENST00000301475 LRRC42Q9Y546 428 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 LOC102724428A0A0B4J2F2 783 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 TCRBV7S2A1N4TA0A589 114 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 CAMTA2O94983 1202 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 ACSL3O95573 720 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 PDHA1P08559 390 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 GNAT1P11488 350 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 HSPA1LP34931 641 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 SKIV2L2P42285 1042 aaKnown RBP11.72□□□□□ -0.53
ZNF558-201ENST00000301475 SIK1P57059 783 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 HYIQ5T013 277 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 CNBD1Q8NA66 436 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 CTNNBL1Q8WYA6 563 aaPredicted RBP11.72□□□□□ -0.53
ZNF558-201ENST00000301475 TMEM237Q96Q45 408 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 TGS1Q96RS0 853 aaKnown RBP11.72□□□□□ -0.53
ZNF558-201ENST00000301475 SYT15Q9BQS2 421 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 CDC42EP4Q9H3Q1 356 aaKnown RBP11.72□□□□□ -0.53
ZNF558-201ENST00000301475 PCYOX1Q9UHG3 505 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 NAV1Q8NEY1 1877 aa11.72□□□□□ -0.53
ZNF558-201ENST00000301475 HIP1RO75146 1068 aa11.71□□□□□ -0.53
ZNF558-201ENST00000301475 NEFHP12036 1026 aa11.71□□□□□ -0.53
ZNF558-201ENST00000301475 ALAS1P13196 640 aa11.71□□□□□ -0.53
ZNF558-201ENST00000301475 FERP16591 822 aa11.71□□□□□ -0.53
ZNF558-201ENST00000301475 CHRNA3P32297 505 aa11.71□□□□□ -0.53
ZNF558-201ENST00000301475 RFC4P35249 363 aa11.71□□□□□ -0.53
ZNF558-201ENST00000301475 ADCY7P51828 1080 aa11.71□□□□□ -0.53
ZNF558-201ENST00000301475 CCDC137Q6PK04 289 aaKnown RBP11.71□□□□□ -0.53
ZNF558-201ENST00000301475 SEPT14Q6ZU15 432 aa11.71□□□□□ -0.53
ZNF558-201ENST00000301475 BCAS3Q9H6U6 928 aa11.71□□□□□ -0.53
ZNF558-201ENST00000301475 AAASQ9NRG9 546 aa11.71□□□□□ -0.53
ZNF558-201ENST00000301475 USP40Q9NVE5 1235 aa11.71□□□□□ -0.53
ZNF558-201ENST00000301475 DDX25Q9UHL0 483 aaKnown RBP11.71□□□□□ -0.53
ZNF558-201ENST00000301475 TRAF3IP3Q9Y228 551 aa11.71□□□□□ -0.53
ZNF558-201ENST00000301475 PTPN22Q9Y2R2 807 aa11.71□□□□□ -0.53
ZNF558-201ENST00000301475 IRF6O14896 467 aa11.71□□□□□ -0.54
ZNF558-201ENST00000301475 TP73O15350 636 aa11.71□□□□□ -0.54
ZNF558-201ENST00000301475 TPBGLP0DKB5 382 aa11.71□□□□□ -0.54
ZNF558-201ENST00000301475 PAPOLAP51003 745 aaKnown RBP11.71□□□□□ -0.54
ZNF558-201ENST00000301475 RAD23BP54727 409 aa11.71□□□□□ -0.54
ZNF558-201ENST00000301475 RRP1BQ14684 758 aaKnown RBP11.71□□□□□ -0.54
ZNF558-201ENST00000301475 TNIP1Q15025 636 aa11.71□□□□□ -0.54
ZNF558-201ENST00000301475 PARP10Q53GL7 1025 aa11.71□□□□□ -0.54
ZNF558-201ENST00000301475 RNF43Q68DV7 783 aa11.71□□□□□ -0.54
ZNF558-201ENST00000301475 CWF19L1Q69YN2 538 aaKnown RBP11.71□□□□□ -0.54
ZNF558-201ENST00000301475 CELF1Q92879 486 aaKnown RBP11.71□□□□□ -0.54
ZNF558-201ENST00000301475 TSC22D3Q99576 134 aa11.71□□□□□ -0.54
ZNF558-201ENST00000301475 KCNK9Q9NPC2 374 aa11.71□□□□□ -0.54
ZNF558-201ENST00000301475 PAPOLBQ9NRJ5 636 aaKnown RBP11.71□□□□□ -0.54
ZNF558-201ENST00000301475 BSDC1Q9NW68 430 aaPredicted RBP11.71□□□□□ -0.54
ZNF558-201ENST00000301475 SAP30BPQ9UHR5 308 aaKnown RBP11.71□□□□□ -0.54
ZNF558-201ENST00000301475 FRMPD2Q68DX3 1309 aaPredicted RBP11.71□□□□□ -0.54
ZNF558-201ENST00000301475 SYNGAP1Q96PV0 1343 aa11.71□□□□□ -0.54
ZNF558-201ENST00000301475 USP17L5A8MUK1 530 aa11.7□□□□□ -0.54
ZNF558-201ENST00000301475 CALB2P22676 271 aa11.7□□□□□ -0.54
ZNF558-201ENST00000301475 CTNNA2P26232 953 aa11.7□□□□□ -0.54
ZNF558-201ENST00000301475 STAT1P42224 750 aa11.7□□□□□ -0.54
ZNF558-201ENST00000301475 RPS6KA3P51812 740 aa11.7□□□□□ -0.54
ZNF558-201ENST00000301475 ITPK1Q13572 414 aa11.7□□□□□ -0.54
ZNF558-201ENST00000301475 TEX9Q8N6V9 391 aa11.7□□□□□ -0.54
ZNF558-201ENST00000301475 ART4Q93070 314 aa11.7□□□□□ -0.54
ZNF558-201ENST00000301475 ANKRD27Q96NW4 1050 aa11.7□□□□□ -0.54
ZNF558-201ENST00000301475 CDCA7Q9BWT1 371 aaPredicted RBP11.7□□□□□ -0.54
ZNF558-201ENST00000301475 MYLK2Q9H1R3 596 aa11.7□□□□□ -0.54
ZNF558-201ENST00000301475 CPSF2Q9P2I0 782 aaKnown RBP11.7□□□□□ -0.54
ZNF558-201ENST00000301475 ASTN1O14525 1302 aa11.7□□□□□ -0.54
ZNF558-201ENST00000301475 POTEFA5A3E0 1075 aa11.7□□□□□ -0.54
ZNF558-201ENST00000301475 POTEIP0CG38 1075 aa11.7□□□□□ -0.54
ZNF558-201ENST00000301475 SOX5P35711 763 aa11.7□□□□□ -0.54
ZNF558-201ENST00000301475 KCNJ1P48048 391 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms