RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 MIEF2Q96C03 454 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 SERPINB12Q96P63 405 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 ZMYND12Q9H0C1 365 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 RMI1Q9H9A7 625 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 PIH1D3Q9NQM4 214 aaKnown RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 CORO1CQ9ULV4 474 aaPredicted RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 CNTNAP5Q8WYK1 1306 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 PRR29P0C7W0 189 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 ACADSP16219 412 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 MLH1P40692 756 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 HADHBP55084 474 aaKnown RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 ADCY1Q08828 1119 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 HDAC11Q96DB2 347 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 LRRC1Q9BTT6 524 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 OSBPL1AQ9BXW6 950 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 FAM192AQ9GZU8 254 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 PDP2Q9P2J9 529 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 USTQ9Y2C2 406 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.84□□□□□ -1.31
VPS35-201ENST00000299138 H0YCG3 227 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 AFPP02771 609 aaKnown RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 NR5A1Q13285 461 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 ZNF268Q14587 947 aaPredicted RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 WASHC2DQ5SRD0 308 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 ALKBH5Q6P6C2 394 aaKnown RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 C6orf89Q6UWU4 347 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 SMCR8Q8TEV9 937 aaPredicted RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 OLFM3Q96PB7 478 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 TLR10Q9BXR5 811 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 IL1RAPL1Q9NZN1 696 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 PACSIN2Q9UNF0 486 aaPredicted RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 IQANK1A0A1B0GTG1 560 aa6.84□□□□□ -1.32
VPS35-201ENST00000299138 DAPK3O43293 454 aa6.84□□□□□ -1.32
VPS35-201ENST00000299138 BPIFB4P59827 614 aa6.84□□□□□ -1.32
VPS35-201ENST00000299138 DHX9Q08211 1270 aaKnown RBP6.84□□□□□ -1.32
VPS35-201ENST00000299138 C11orf63Q6NUN7 778 aa6.84□□□□□ -1.32
VPS35-201ENST00000299138 OLFML1Q6UWY5 402 aa6.84□□□□□ -1.32
VPS35-201ENST00000299138 ST13P5Q8NFI4 369 aaPredicted RBP6.84□□□□□ -1.32
VPS35-201ENST00000299138 SEC14L1Q92503 715 aa6.84□□□□□ -1.32
VPS35-201ENST00000299138 ZFYVE19Q96K21 471 aa6.84□□□□□ -1.32
VPS35-201ENST00000299138 KRT12Q99456 494 aa6.84□□□□□ -1.32
VPS35-201ENST00000299138 TTC1Q99614 292 aa6.84□□□□□ -1.32
VPS35-201ENST00000299138 TRIM56Q9BRZ2 755 aaKnown RBP6.84□□□□□ -1.32
VPS35-201ENST00000299138 ARMT1Q9H993 441 aa6.84□□□□□ -1.32
VPS35-201ENST00000299138 MCM8Q9UJA3 840 aa6.84□□□□□ -1.32
VPS35-201ENST00000299138 RASGRF2O14827 1237 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 CFLARO15519 480 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 S100A9P06702 114 aaKnown RBP6.83□□□□□ -1.32
VPS35-201ENST00000299138 TSHRP16473 764 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 STAT4Q14765 748 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 TBCCQ15814 346 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 EP400NLQ6ZTU2 488 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 CCDC149Q6ZUS6 474 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 SEC16BQ96JE7 1060 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 SYNPO2Q9UMS6 1093 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 TCRBV5S4A2TA0A5A2 114 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 AOC3Q16853 763 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 TMC5Q6UXY8 1006 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 CDH24Q86UP0 819 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 PNMA1Q8ND90 353 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 ATL2Q8NHH9 583 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 TIPINQ9BVW5 301 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 FRMD8Q9BZ67 464 aaPredicted RBP6.83□□□□□ -1.32
VPS35-201ENST00000299138 IMPG2Q9BZV3 1241 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 SLC38A10Q9HBR0 1119 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 NFU1Q9UMS0 254 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 GRIN2DO15399 1336 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 STXBP3O00186 592 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 CYP27B1O15528 508 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 WDR47O94967 919 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 RARGP13631 454 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 ATAD3BQ5T9A4 648 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 KRT39Q6A163 491 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 TBC1D1Q86TI0 1168 aaPredicted RBP6.83□□□□□ -1.32
VPS35-201ENST00000299138 CATSPER3Q86XQ3 398 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 MFN1Q8IWA4 741 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 FRMD8P1Q9BZ68 369 aaPredicted RBP6.83□□□□□ -1.32
VPS35-201ENST00000299138 RASSF10A6NK89 507 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 NOP9Q86U38 636 aaKnown RBP6.83□□□□□ -1.32
VPS35-201ENST00000299138 RASGEF1CQ8N431 466 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 LRRN4CLQ8ND94 238 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 CASP10Q92851 521 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 CCDC17Q96LX7 622 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 KIFC3Q9BVG8 833 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 IRX2Q9BZI1 471 aaPredicted RBP6.83□□□□□ -1.32
VPS35-201ENST00000299138 UVRAGQ9P2Y5 699 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 SIK3Q9Y2K2 1263 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 USP15Q9Y4E8 981 aaPredicted RBP6.83□□□□□ -1.32
VPS35-201ENST00000299138 PXDNQ92626 1479 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 CDH16O75309 829 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 ITGB3BPQ13352 177 aaPredicted RBP6.83□□□□□ -1.32
VPS35-201ENST00000299138 RASA2Q15283 850 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 CALCRLQ16602 461 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 ELMSAN1Q6PJG2 1045 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 SNX29Q8TEQ0 813 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 DMGDHQ9UI17 866 aaKnown RBP6.83□□□□□ -1.32
VPS35-201ENST00000299138 ZHX2Q9Y6X8 837 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 ZNF804BA4D1E1 1349 aa6.83□□□□□ -1.32
VPS35-201ENST00000299138 LRRC53A6NM62 1247 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms