RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 A0A0U1RQJ8 604 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 SKAP2O75563 359 aaPredicted RBP16.47■□□□□ 0.23
SHH-201ENST00000297261 INHBAP08476 426 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 FGFR4P22455 802 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 ARHGEF16Q5VV41 709 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 MCF2L2Q86YR7 1114 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.47■□□□□ 0.23
SHH-201ENST00000297261 NOD2Q9HC29 1040 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 BATF3Q9NR55 127 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 CSADQ9Y600 493 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 IRX4P78413 519 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 TMEM60Q9H2L4 133 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 NYAP2Q9P242 653 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 FAM160B2Q86V87 743 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 JMJD4Q9H9V9 463 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.47■□□□□ 0.23
SHH-201ENST00000297261 DDTLA6NHG4 134 aaPredicted RBP16.47■□□□□ 0.23
SHH-201ENST00000297261 SGK1O00141 431 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 RANBP1P43487 201 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 RHBDL3P58872 404 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 AP3B2Q13367 1082 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 EARS2Q5JPH6 523 aaKnown RBP16.47■□□□□ 0.23
SHH-201ENST00000297261 CERS5Q8N5B7 392 aa16.47■□□□□ 0.23
SHH-201ENST00000297261 GLYCTKQ8IVS8 523 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 SULF1Q8IWU6 871 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 GUF1Q8N442 669 aaKnown RBP16.46■□□□□ 0.23
SHH-201ENST00000297261 TEKT3Q9BXF9 490 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 CCT8L1PA6NM43 557 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 PPFIA2O75334 1257 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 TRPA1O75762 1119 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 KLRC1P26715 233 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 ARHGAP4P98171 946 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 MKRN4PQ13434 485 aaPredicted RBP16.46■□□□□ 0.23
SHH-201ENST00000297261 SPARCL1Q14515 664 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 KCNB1Q14721 858 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 RFX8Q6ZV50 586 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 TRPM8Q7Z2W7 1104 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 HDAC7Q8WUI4 952 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 ATP2A3Q93084 1043 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 SLITRK6Q9H5Y7 841 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 DCTN3O75935 186 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 TRPC3Q13507 836 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 GEN1Q17RS7 908 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 HP1BP3Q5SSJ5 553 aaPredicted RBP16.46■□□□□ 0.23
SHH-201ENST00000297261 SLC30A9Q6PML9 568 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 ZNF577Q9BSK1 485 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 DNAJC12Q9UKB3 198 aa16.46■□□□□ 0.23
SHH-201ENST00000297261 RASSF10A6NK89 507 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 ZNF18P17022 549 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 TMED1Q13445 227 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 SLC16A10Q8TF71 515 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 CFAP57Q96MR6 1250 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 HEMGNQ9BXL5 484 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 TMEM39BQ9GZU3 492 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 C1orf112Q9NSG2 853 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 DBR1Q9UK59 544 aaKnown RBP16.45■□□□□ 0.22
SHH-201ENST00000297261 PVALEFA0A1B0GWK0 134 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 EAPPQ56P03 285 aaPredicted RBP16.45■□□□□ 0.22
SHH-201ENST00000297261 MAP3K21Q5TCX8 1036 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 SYT2Q8N9I0 419 aaPredicted RBP16.45■□□□□ 0.22
SHH-201ENST00000297261 NKX2-3Q8TAU0 364 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 PPP4R1Q8TF05 950 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 MAML1Q92585 1016 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 CELF4Q9BZC1 486 aaKnown RBP16.45■□□□□ 0.22
SHH-201ENST00000297261 BHMT2Q9H2M3 363 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 E9PMD0 336 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 GRAMD1BQ3KR37 738 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 CCDC14Q49A88 953 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 NAIF1Q69YI7 327 aaPredicted RBP16.45■□□□□ 0.22
SHH-201ENST00000297261 APOBEC3HQ6NTF7 200 aaKnown RBP16.45■□□□□ 0.22
SHH-201ENST00000297261 EPM2AIP1Q7L775 607 aaPredicted RBP16.45■□□□□ 0.22
SHH-201ENST00000297261 NLRX1Q86UT6 975 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 PIP4K2CQ8TBX8 421 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 ZNF384Q8TF68 577 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 ADAM33Q9BZ11 813 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 MAD1L1Q9Y6D9 718 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 SORBS3O60504 671 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 MT-ND3P03897 115 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 RWDD2BP57060 319 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 SLC18A3Q16572 532 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 HSP90AA5PQ58FG0 334 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 ZNF746Q6NUN9 644 aaPredicted RBP16.45■□□□□ 0.22
SHH-201ENST00000297261 DCPSQ96C86 337 aaKnown RBP16.45■□□□□ 0.22
SHH-201ENST00000297261 PAGR1Q9BTK6 254 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 Q9H521 79 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 TACC3Q9Y6A5 838 aa16.45■□□□□ 0.22
SHH-201ENST00000297261 hCG_2014768A0A024R1R8 64 aa16.44■□□□□ 0.22
SHH-201ENST00000297261 PAPD7Q5XG87 772 aaKnown RBP16.44■□□□□ 0.22
SHH-201ENST00000297261 KDM7AQ6ZMT4 941 aa16.44■□□□□ 0.22
SHH-201ENST00000297261 FAM151AQ8WW52 585 aa16.44■□□□□ 0.22
SHH-201ENST00000297261 RUBCNQ92622 972 aa16.44■□□□□ 0.22
SHH-201ENST00000297261 TTC1Q99614 292 aa16.44■□□□□ 0.22
SHH-201ENST00000297261 GAKO14976 1311 aa16.44■□□□□ 0.22
SHH-201ENST00000297261 ONECUT3O60422 494 aaPredicted RBP16.44■□□□□ 0.22
SHH-201ENST00000297261 SPATA21Q7Z572 469 aa16.44■□□□□ 0.22
SHH-201ENST00000297261 PROM2Q8N271 834 aa16.44■□□□□ 0.22
SHH-201ENST00000297261 DNAI2Q9GZS0 605 aa16.44■□□□□ 0.22
SHH-201ENST00000297261 HSD17B3P37058 310 aa16.44■□□□□ 0.22
SHH-201ENST00000297261 BBS9Q3SYG4 887 aa16.44■□□□□ 0.22
SHH-201ENST00000297261 FGFR1OP2Q9NVK5 253 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms