RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 CD97P48960 835 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 DAB2P98082 770 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 QPCTQ16769 361 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 DNAL1Q4LDG9 190 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 UTS2BQ765I0 119 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 CRACR2BQ8N4Y2 399 aaPredicted RBP12.48□□□□□ -0.41
SNIP1-201ENST00000296215 C1orf131Q8NDD1 294 aaKnown RBP12.48□□□□□ -0.41
SNIP1-201ENST00000296215 STAMQ92783 540 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 EFHD2Q96C19 240 aaPredicted RBP12.48□□□□□ -0.41
SNIP1-201ENST00000296215 NAPBQ9H115 298 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 MLXIPQ9HAP2 919 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 DDX25Q9UHL0 483 aaKnown RBP12.48□□□□□ -0.41
SNIP1-201ENST00000296215 B2RBV5 119 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 ZNF12P17014 697 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 GRK2P25098 689 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 CHN2P52757 468 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 HAND2P61296 217 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 RILPL1Q5EBL4 403 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 BTNL9Q6UXG8 535 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 RBM43Q6ZSC3 357 aaKnown RBP12.48□□□□□ -0.41
SNIP1-201ENST00000296215 L3MBTL3Q96JM7 780 aaPredicted RBP12.48□□□□□ -0.41
SNIP1-201ENST00000296215 QKIQ96PU8 341 aaKnown RBP eCLIP12.48□□□□□ -0.413e-7■■■■■ 27.5
SNIP1-201ENST00000296215 NDST4Q9H3R1 872 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 MBIPQ9NS73 344 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 IPPQ9Y573 584 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 CALB1P05937 261 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 RAB14P61106 215 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 EZH2Q15910 746 aaKnown RBP12.48□□□□□ -0.41
SNIP1-201ENST00000296215 COBLL1Q53SF7 1204 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 ADCK1Q86TW2 530 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 CABP7Q86V35 215 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 CLVS1Q8IUQ0 354 aaPredicted RBP12.48□□□□□ -0.41
SNIP1-201ENST00000296215 EME1Q96AY2 570 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 NSL1Q96IY1 281 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 DMTF1Q9Y222 760 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 APOBEC2Q9Y235 224 aaKnown RBP12.48□□□□□ -0.41
SNIP1-201ENST00000296215 SNX24Q9Y343 169 aa12.48□□□□□ -0.41
SNIP1-201ENST00000296215 IFT140Q96RY7 1462 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 PRAMEP78395 509 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 TRIM25Q14258 630 aaKnown RBP12.47□□□□□ -0.41
SNIP1-201ENST00000296215 SYDE2Q5VT97 1194 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 AGAP3Q96P47 875 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 PRAM1Q96QH2 718 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 RPRD1BQ9NQG5 326 aaKnown RBP12.47□□□□□ -0.41
SNIP1-201ENST00000296215 POLR3EQ9NVU0 708 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 CCDC162PA2VCL2 907 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 GRID2IPA4D2P6 1211 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 UNCXA6NJT0 531 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 DUSP9Q99956 384 aaKnown RBP12.47□□□□□ -0.41
SNIP1-201ENST00000296215 EHD1Q9H4M9 534 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 PITPNM2Q9BZ72 1349 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 TMEM120BA0PK00 339 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 PLEKHG3A1L390 1219 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 H7C0C1 242 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 APOL1O14791 398 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 DRD4P21917 467 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 SLC16A2P36021 539 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 KDSRQ06136 332 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 CCDC89Q8N998 374 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 NCOA7Q8NI08 942 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 AIFM3Q96NN9 605 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 DDX47Q9H0S4 455 aaKnown RBP12.47□□□□□ -0.41
SNIP1-201ENST00000296215 THAP9Q9H5L6 903 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 MKS1Q9NXB0 559 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 TLR7Q9NYK1 1049 aaKnown RBP12.47□□□□□ -0.41
SNIP1-201ENST00000296215 SMARCAL1Q9NZC9 954 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 RTEL1-TNFRSF6BF6WH68 1400 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 GRIN2DO15399 1336 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 A0A0J9YVX5 310 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 SLC9A3P48764 834 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 INPP1P49441 399 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 SPIDRQ14159 915 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 AGAP9Q5VTM2 703 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 RHOBTB2Q9BYZ6 727 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 CCDC177Q9NQR7 707 aaPredicted RBP12.47□□□□□ -0.41
SNIP1-201ENST00000296215 ARHGAP26Q9UNA1 814 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 EMILIN1Q9Y6C2 1016 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 CFAP65Q6ZU64 1925 aaKnown RBP12.47□□□□□ -0.41
SNIP1-201ENST00000296215 AOX1Q06278 1338 aa12.47□□□□□ -0.41
SNIP1-201ENST00000296215 INO80B-WBP1J3KQ70 363 aa12.46□□□□□ -0.41
SNIP1-201ENST00000296215 UNC5CO95185 931 aa12.46□□□□□ -0.41
SNIP1-201ENST00000296215 FAM58BPP0C7Q3 252 aa12.46□□□□□ -0.41
SNIP1-201ENST00000296215 ADCY8P40145 1251 aa12.46□□□□□ -0.41
SNIP1-201ENST00000296215 TNNI2P48788 182 aa12.46□□□□□ -0.41
SNIP1-201ENST00000296215 TRIP13Q15645 432 aaPredicted RBP12.46□□□□□ -0.41
SNIP1-201ENST00000296215 BEGAINQ9BUH8 593 aa12.46□□□□□ -0.41
SNIP1-201ENST00000296215 COBLO75128 1261 aa12.46□□□□□ -0.41
SNIP1-201ENST00000296215 PARNO95453 639 aaKnown RBP12.46□□□□□ -0.41
SNIP1-201ENST00000296215 PSMG1O95456 288 aa12.46□□□□□ -0.41
SNIP1-201ENST00000296215 BDNFP23560 247 aa12.46□□□□□ -0.41
SNIP1-201ENST00000296215 EIF4A3P38919 411 aaKnown RBP12.46□□□□□ -0.41
SNIP1-201ENST00000296215 CCDC14Q49A88 953 aa12.46□□□□□ -0.41
SNIP1-201ENST00000296215 RHOT2Q8IXI1 618 aa12.46□□□□□ -0.41
SNIP1-201ENST00000296215 CYP4X1Q8N118 509 aa12.46□□□□□ -0.41
SNIP1-201ENST00000296215 TUBGCP3Q96CW5 907 aa12.46□□□□□ -0.41
SNIP1-201ENST00000296215 MOV10Q9HCE1 1003 aaKnown RBP12.46□□□□□ -0.41
SNIP1-201ENST00000296215 SCAF11Q99590 1463 aaKnown RBP12.46□□□□□ -0.41
SNIP1-201ENST00000296215 AXIN1O15169 862 aa12.46□□□□□ -0.42
SNIP1-201ENST00000296215 TSPAN1O60635 241 aa12.46□□□□□ -0.42
SNIP1-201ENST00000296215 KRT36O76013 467 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms