RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 RBM10P98175 930 aaKnown RBP16.07■□□□□ 0.16
HMGN3-201ENST00000275036 ADAM15Q13444 863 aa16.07■□□□□ 0.16
HMGN3-201ENST00000275036 POTEGQ6S5H5 508 aa16.07■□□□□ 0.16
HMGN3-201ENST00000275036 CATSPER4Q7RTX7 472 aa16.07■□□□□ 0.16
HMGN3-201ENST00000275036 ASAP3Q8TDY4 903 aa16.07■□□□□ 0.16
HMGN3-201ENST00000275036 TCP11Q8WWU5 503 aa16.07■□□□□ 0.16
HMGN3-201ENST00000275036 LPPQ93052 612 aa16.07■□□□□ 0.16
HMGN3-201ENST00000275036 POLR3CQ9BUI4 534 aaPredicted RBP16.07■□□□□ 0.16
HMGN3-201ENST00000275036 INO80BQ9C086 356 aaPredicted RBP16.07■□□□□ 0.16
HMGN3-201ENST00000275036 TUFT1Q9NNX1 390 aa16.07■□□□□ 0.16
HMGN3-201ENST00000275036 CHST12Q9NRB3 414 aa16.07■□□□□ 0.16
HMGN3-201ENST00000275036 RNF216Q9NWF9 866 aaPredicted RBP16.07■□□□□ 0.16
HMGN3-201ENST00000275036 PIN4Q9Y237 131 aaKnown RBP16.07■□□□□ 0.16
HMGN3-201ENST00000275036 FSCN2O14926 492 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 DGAT1O75907 488 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 LAG3P18627 525 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 RPA1P27694 616 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 FXR2P51116 673 aaKnown RBP eCLIP16.06■□□□□ 0.16
HMGN3-201ENST00000275036 PTGDRQ13258 359 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 IL17AQ16552 155 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 ECM1Q16610 540 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 LONRF3Q496Y0 759 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 MCTP1Q6DN14 999 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 SRGAP1Q7Z6B7 1085 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 RBM23Q86U06 439 aaKnown RBP16.06■□□□□ 0.16
HMGN3-201ENST00000275036 THNSL1Q8IYQ7 743 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 LRRC43Q8N309 656 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 RNF149Q8NC42 400 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 TRAIPQ9BWF2 469 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 EPHX3Q9H6B9 360 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 AGPAT5Q9NUQ2 364 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 DACT1Q9NYF0 836 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 CLEC1BQ9P126 229 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 KIF3AQ9Y496 699 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 PCDHB12Q9Y5F1 795 aa16.06■□□□□ 0.16
HMGN3-201ENST00000275036 ASAP2O43150 1006 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 HOXA2O43364 376 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 USO1O60763 962 aaKnown RBP16.05■□□□□ 0.16
HMGN3-201ENST00000275036 EOMESO95936 686 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 XRCC6P12956 609 aaKnown RBP eCLIP16.05■□□□□ 0.16
HMGN3-201ENST00000275036 GLRA2P23416 452 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 HOXA11P31270 313 aaPredicted RBP16.05■□□□□ 0.16
HMGN3-201ENST00000275036 ARL2P36404 184 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 NRIP1P48552 1158 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 CAPSQ13938 189 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 UBXN11Q5T124 520 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 TWF2Q6IBS0 349 aaKnown RBP16.05■□□□□ 0.16
HMGN3-201ENST00000275036 KCNT2Q6UVM3 1135 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 VN1R2Q8NFZ6 395 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 MSLNLQ96KJ4 702 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 GPRC5CQ9NQ84 441 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 TLR9Q9NR96 1032 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.05■□□□□ 0.16
HMGN3-201ENST00000275036 AAASQ9NRG9 546 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 FAM105AQ9NUU6 356 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 SMC3Q9UQE7 1217 aa16.05■□□□□ 0.16
HMGN3-201ENST00000275036 PER2O15055 1255 aa16.04■□□□□ 0.16
HMGN3-201ENST00000275036 NCK2O43639 380 aa16.04■□□□□ 0.16
HMGN3-201ENST00000275036 B4GALT3O60512 393 aa16.04■□□□□ 0.16
HMGN3-201ENST00000275036 PTENP60484 403 aa16.04■□□□□ 0.16
HMGN3-201ENST00000275036 PLCB3Q01970 1234 aa16.04■□□□□ 0.16
HMGN3-201ENST00000275036 UBE3AQ05086 875 aa16.04■□□□□ 0.16
HMGN3-201ENST00000275036 CUL4AQ13619 759 aa16.04■□□□□ 0.16
HMGN3-201ENST00000275036 MXD4Q14582 209 aaPredicted RBP16.04■□□□□ 0.16
HMGN3-201ENST00000275036 TMEM173Q86WV6 379 aaPredicted RBP16.04■□□□□ 0.16
HMGN3-201ENST00000275036 IFNLR1Q8IU57 520 aaPredicted RBP16.04■□□□□ 0.16
HMGN3-201ENST00000275036 EFHBQ8N7U6 833 aa16.04■□□□□ 0.16
HMGN3-201ENST00000275036 IGSF22Q8N9C0 903 aa16.04■□□□□ 0.16
HMGN3-201ENST00000275036 CCDC43Q96MW1 224 aaKnown RBP16.04■□□□□ 0.16
HMGN3-201ENST00000275036 NACC1Q96RE7 527 aa16.04■□□□□ 0.16
HMGN3-201ENST00000275036 POLR3FQ9H1D9 316 aaPredicted RBP16.04■□□□□ 0.16
HMGN3-201ENST00000275036 DBR1Q9UK59 544 aaKnown RBP16.04■□□□□ 0.16
HMGN3-201ENST00000275036 BARX2Q9UMQ3 279 aaPredicted RBP16.04■□□□□ 0.16
HMGN3-201ENST00000275036 TDRD15B5MCY1 1934 aaKnown RBP16.04■□□□□ 0.16
HMGN3-201ENST00000275036 PP2D1A8MPX8 630 aa16.03■□□□□ 0.16
HMGN3-201ENST00000275036 MBTPS2O43462 519 aa16.03■□□□□ 0.16
HMGN3-201ENST00000275036 AFF1P51825 1210 aaKnown RBP16.03■□□□□ 0.16
HMGN3-201ENST00000275036 ZP2Q05996 745 aa16.03■□□□□ 0.16
HMGN3-201ENST00000275036 PUS10Q3MIT2 529 aaKnown RBP16.03■□□□□ 0.16
HMGN3-201ENST00000275036 MAEAQ7L5Y9 396 aa16.03■□□□□ 0.16
HMGN3-201ENST00000275036 ABI1Q8IZP0 508 aa16.03■□□□□ 0.16
HMGN3-201ENST00000275036 SLC39A11Q8N1S5 342 aa16.03■□□□□ 0.16
HMGN3-201ENST00000275036 ERMNQ8TAM6 284 aa16.03■□□□□ 0.16
HMGN3-201ENST00000275036 MRPS27Q92552 414 aaKnown RBP16.03■□□□□ 0.16
HMGN3-201ENST00000275036 ZNF558Q96NG5 402 aa16.03■□□□□ 0.16
HMGN3-201ENST00000275036 C11orf16Q9NQ32 467 aa16.03■□□□□ 0.16
HMGN3-201ENST00000275036 LRWD1Q9UFC0 647 aa16.03■□□□□ 0.16
HMGN3-201ENST00000275036 RAPGEFL1Q9UHV5 662 aa16.03■□□□□ 0.16
HMGN3-201ENST00000275036 MYH11P35749 1972 aa16.03■□□□□ 0.16
HMGN3-201ENST00000275036 HIDE1A8MVS5 230 aa16.02■□□□□ 0.16
HMGN3-201ENST00000275036 NT5C1B-RDH14C9J2C7 533 aa16.02■□□□□ 0.16
HMGN3-201ENST00000275036 H3BQV1 296 aa16.02■□□□□ 0.16
HMGN3-201ENST00000275036 TSPAN1O60635 241 aa16.02■□□□□ 0.16
HMGN3-201ENST00000275036 ZNF623O75123 536 aa16.02■□□□□ 0.16
HMGN3-201ENST00000275036 OFD1O75665 1012 aa16.02■□□□□ 0.16
HMGN3-201ENST00000275036 CDC25AP30304 524 aa16.02■□□□□ 0.16
HMGN3-201ENST00000275036 CCT6AP40227 531 aaKnown RBP16.02■□□□□ 0.16
HMGN3-201ENST00000275036 NDUFV1P49821 464 aa16.02■□□□□ 0.16
HMGN3-201ENST00000275036 MBTD1Q05BQ5 628 aa16.02■□□□□ 0.16
HMGN3-201ENST00000275036 POU5F1BQ06416 359 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms