RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 SPATA33Q96N06 139 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 SLC8A2Q9UPR5 921 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 FAM205CA6NFA0 338 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 SDC4P31431 198 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 SPARCL1Q14515 664 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 MTF1Q14872 753 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 SYT2Q8N9I0 419 aaPredicted RBP12.23□□□□□ -0.45
USP53-201ENST00000274030 AFG1LQ8WV93 481 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 OSBPL9Q96SU4 736 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 ADAM33Q9BZ11 813 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 GTSE1Q9NYZ3 720 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 CACNB2Q08289 660 aaPredicted RBP12.22□□□□□ -0.45
USP53-201ENST00000274030 STOX1Q6ZVD7 989 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 SRBD1Q8N5C6 995 aaKnown RBP12.22□□□□□ -0.45
USP53-201ENST00000274030 C1orf54Q8WWF1 131 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 FAM167AQ96KS9 214 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 FBXO40Q9UH90 709 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 SCAF8Q9UPN6 1271 aaKnown RBP12.22□□□□□ -0.45
USP53-201ENST00000274030 EMSYQ7Z589 1322 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 A0A087WUV0 522 aaPredicted RBP12.22□□□□□ -0.45
USP53-201ENST00000274030 MIF4GDA9UHW6 222 aaKnown RBP12.22□□□□□ -0.45
USP53-201ENST00000274030 NMT1P30419 496 aaKnown RBP12.22□□□□□ -0.45
USP53-201ENST00000274030 CIITAP33076 1130 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 FOXO4P98177 505 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 GPS1Q13098 491 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 TFDP2Q14188 446 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 LRRC14Q15048 493 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 SLC10A5Q5PT55 438 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 MXD3Q9BW11 206 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 ZCCHC17Q9NP64 241 aaKnown RBP12.22□□□□□ -0.45
USP53-201ENST00000274030 TTC37Q6PGP7 1564 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 NBPF26B4DH59 902 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 BEND6Q5SZJ8 279 aaPredicted RBP12.22□□□□□ -0.45
USP53-201ENST00000274030 NBPF10Q6P3W6 841 aaKnown RBP12.22□□□□□ -0.45
USP53-201ENST00000274030 NBPF15Q8N660 670 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 DHX38Q92620 1227 aaKnown RBP12.22□□□□□ -0.45
USP53-201ENST00000274030 FAM8A1Q9UBU6 413 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.22□□□□□ -0.45
USP53-201ENST00000274030 AFF2P51816 1311 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 MAP3K7O43318 606 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 CHRNA5P30532 468 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 AP1B1Q10567 949 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 C1orf228Q6PIY5 440 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 FRA10AC1Q70Z53 315 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 EPM2AIP1Q7L775 607 aaPredicted RBP12.22□□□□□ -0.45
USP53-201ENST00000274030 SLC13A1Q9BZW2 595 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 ADGRL3Q9HAR2 1447 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 KIAA1586Q9HCI6 787 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 SYNDIG1LA6NDD5 238 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 DMTNQ08495 405 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 KDELC2Q7Z4H8 507 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 RNF135Q8IUD6 432 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 BEST2Q8NFU1 509 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 IFT43Q96FT9 208 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 RBAKQ9NYW8 714 aaPredicted RBP12.22□□□□□ -0.45
USP53-201ENST00000274030 ARHGEF5Q12774 1597 aa12.22□□□□□ -0.45
USP53-201ENST00000274030 HMGCS2P54868 508 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 CDR2Q01850 454 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 WDR75Q8IWA0 830 aaKnown RBP12.21□□□□□ -0.45
USP53-201ENST00000274030 SPON2Q9BUD6 331 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 RNF181Q9P0P0 153 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 ADAM21Q9UKJ8 722 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 TADA3O75528 432 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 CALB1P05937 261 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 TNFAIP2Q03169 654 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 NFIXQ14938 502 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 FAM102AQ5T9C2 384 aaPredicted RBP12.21□□□□□ -0.45
USP53-201ENST00000274030 RNF219Q5W0B1 726 aaPredicted RBP12.21□□□□□ -0.45
USP53-201ENST00000274030 ZC3H18Q86VM9 953 aaKnown RBP12.21□□□□□ -0.45
USP53-201ENST00000274030 DHX40Q8IX18 779 aaKnown RBP12.21□□□□□ -0.45
USP53-201ENST00000274030 NCLNQ969V3 563 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 ATXN7L3BQ96GX2 97 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 ISCA1Q9BUE6 129 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 TRIM55Q9BYV6 548 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 DHX35Q9H5Z1 703 aaKnown RBP12.21□□□□□ -0.45
USP53-201ENST00000274030 KLHL11Q9NVR0 708 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 HNRNPH2P55795 449 aaKnown RBP12.21□□□□□ -0.45
USP53-201ENST00000274030 POLE2P56282 527 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 ESRRGP62508 458 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 TSPY1Q01534 308 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 DRP2Q13474 957 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 TTLL4Q14679 1199 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 KRT39Q6A163 491 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 TRIM59Q8IWR1 403 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 MORC4Q8TE76 937 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 PRDM5Q9NQX1 630 aaPredicted RBP12.21□□□□□ -0.45
USP53-201ENST00000274030 MID2Q9UJV3 735 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 ADGRG1Q9Y653 693 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 MYO5CQ9NQX4 1742 aa12.21□□□□□ -0.45
USP53-201ENST00000274030 CPSF1Q10570 1443 aaKnown RBP12.21□□□□□ -0.45
USP53-201ENST00000274030 A8MXQ7 604 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 RECQLP46063 649 aaPredicted RBP12.21□□□□□ -0.46
USP53-201ENST00000274030 PSMC5P62195 406 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 NOP14P78316 857 aaKnown RBP12.21□□□□□ -0.46
USP53-201ENST00000274030 HSP90AA5PQ58FG0 334 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 ANKRD40Q6AI12 368 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 AGR3Q8TD06 166 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 SLC9A2Q9UBY0 812 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 ZDHHC9Q9Y397 364 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 STK25O00506 426 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms