RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 FBXL5Q9UKA1 691 aa18.02■□□□□ 0.47
VPS54-201ENST00000272322 YWHABP31946 246 aaKnown RBP18.01■□□□□ 0.47
VPS54-201ENST00000272322 PLTPP55058 493 aa18.01■□□□□ 0.47
VPS54-201ENST00000272322 PPFIA1Q13136 1202 aa18.01■□□□□ 0.47
VPS54-201ENST00000272322 CHADLQ6NUI6 762 aa18.01■□□□□ 0.47
VPS54-201ENST00000272322 NT5DC3Q86UY8 548 aa18.01■□□□□ 0.47
VPS54-201ENST00000272322 SLC47A2Q86VL8 602 aa18.01■□□□□ 0.47
VPS54-201ENST00000272322 PLEKHO2Q8TD55 490 aa18.01■□□□□ 0.47
VPS54-201ENST00000272322 ALG3Q92685 438 aa18.01■□□□□ 0.47
VPS54-201ENST00000272322 THSD7AQ9UPZ6 1657 aa18.01■□□□□ 0.47
VPS54-201ENST00000272322 KRT5P13647 590 aa18.01■□□□□ 0.47
VPS54-201ENST00000272322 MAPK7Q13164 816 aa18.01■□□□□ 0.47
VPS54-201ENST00000272322 PPP2R5CQ13362 524 aa18.01■□□□□ 0.47
VPS54-201ENST00000272322 STK33Q9BYT3 514 aa18.01■□□□□ 0.47
VPS54-201ENST00000272322 BZW2Q9Y6E2 419 aaKnown RBP18.01■□□□□ 0.47
VPS54-201ENST00000272322 DCDC2CA8MYV0 355 aa18■□□□□ 0.47
VPS54-201ENST00000272322 VAMP7P51809 220 aa18■□□□□ 0.47
VPS54-201ENST00000272322 SEZ6Q53EL9 994 aa18■□□□□ 0.47
VPS54-201ENST00000272322 NIM1KQ8IY84 436 aa18■□□□□ 0.47
VPS54-201ENST00000272322 FLAD1Q8NFF5 587 aa18■□□□□ 0.47
VPS54-201ENST00000272322 BUD13Q9BRD0 619 aaKnown RBP eCLIP18■□□□□ 0.471e-6■■■□□ 15.8
VPS54-201ENST00000272322 HSPBP1Q9NZL4 362 aa18■□□□□ 0.47
VPS54-201ENST00000272322 ANKRD63C9JTQ0 380 aa18■□□□□ 0.47
VPS54-201ENST00000272322 VPS41P49754 854 aa18■□□□□ 0.47
VPS54-201ENST00000272322 RARRES1P49788 294 aa18■□□□□ 0.47
VPS54-201ENST00000272322 TKFCQ3LXA3 575 aa18■□□□□ 0.47
VPS54-201ENST00000272322 BICD1Q96G01 975 aa18■□□□□ 0.47
VPS54-201ENST00000272322 BORCS6Q96GS4 357 aa18■□□□□ 0.47
VPS54-201ENST00000272322 RANBP17Q9H2T7 1088 aaKnown RBP18■□□□□ 0.47
VPS54-201ENST00000272322 GDF3Q9NR23 364 aa18■□□□□ 0.47
VPS54-201ENST00000272322 CNTNAP1P78357 1384 aa18■□□□□ 0.47
VPS54-201ENST00000272322 ARFGEF1Q9Y6D6 1849 aa18■□□□□ 0.47
VPS54-201ENST00000272322 PIK3CDO00329 1044 aa18■□□□□ 0.47
VPS54-201ENST00000272322 IVLP07476 585 aa18■□□□□ 0.47
VPS54-201ENST00000272322 NF2P35240 595 aa18■□□□□ 0.47
VPS54-201ENST00000272322 SLCO1A2P46721 670 aa18■□□□□ 0.47
VPS54-201ENST00000272322 JAM2P57087 298 aa18■□□□□ 0.47
VPS54-201ENST00000272322 TNIP1Q15025 636 aa18■□□□□ 0.47
VPS54-201ENST00000272322 CCDC113Q9H0I3 377 aa18■□□□□ 0.47
VPS54-201ENST00000272322 STK32BQ9NY57 414 aa18■□□□□ 0.47
VPS54-201ENST00000272322 ANKRD31Q8N7Z5 1873 aa18■□□□□ 0.47
VPS54-201ENST00000272322 HSD17B3P37058 310 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 MMP14P50281 582 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 SNX1Q13596 522 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 BAATQ14032 418 aaPredicted RBP17.99■□□□□ 0.47
VPS54-201ENST00000272322 IFI16Q16666 785 aaKnown RBP17.99■□□□□ 0.47
VPS54-201ENST00000272322 ARHGEF16Q5VV41 709 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 STXBP4Q6ZWJ1 553 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 ATG4CQ96DT6 458 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 TAF1DQ9H5J8 278 aaPredicted RBP17.99■□□□□ 0.47
VPS54-201ENST00000272322 GOLGA6L10A6NI86 522 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 ASNSP08243 561 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 IFFO1Q0D2I5 559 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 TRIP13Q15645 432 aaPredicted RBP17.99■□□□□ 0.47
VPS54-201ENST00000272322 UBAP2Q5T6F2 1119 aaKnown RBP17.99■□□□□ 0.47
VPS54-201ENST00000272322 DCAF12L1Q5VU92 463 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 MICALL1Q8N3F8 863 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 GPR88Q9GZN0 384 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 ALG6Q9Y672 507 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 ADRB2P07550 413 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 SSR1P43307 286 aaKnown RBP17.99■□□□□ 0.47
VPS54-201ENST00000272322 QARSP47897 775 aaKnown RBP17.99■□□□□ 0.47
VPS54-201ENST00000272322 BBXQ8WY36 941 aaPredicted RBP17.99■□□□□ 0.47
VPS54-201ENST00000272322 PIK3R5Q8WYR1 880 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 C18orf8Q96DM3 657 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 EHMT1Q9H9B1 1298 aa17.99■□□□□ 0.47
VPS54-201ENST00000272322 ZNF536O15090 1300 aa17.98■□□□□ 0.47
VPS54-201ENST00000272322 TCRBV7S2A1N4TA0A589 114 aa17.98■□□□□ 0.47
VPS54-201ENST00000272322 MMEP08473 750 aa17.98■□□□□ 0.47
VPS54-201ENST00000272322 MXI1P50539 228 aa17.98■□□□□ 0.47
VPS54-201ENST00000272322 SPDYE2Q495Y8 402 aa17.98■□□□□ 0.47
VPS54-201ENST00000272322 EEPD1Q7L9B9 569 aa17.98■□□□□ 0.47
VPS54-201ENST00000272322 PRPF38AQ8NAV1 312 aaKnown RBP17.98■□□□□ 0.47
VPS54-201ENST00000272322 SYTL5Q8TDW5 730 aaPredicted RBP17.98■□□□□ 0.47
VPS54-201ENST00000272322 MRIQ9BWK5 157 aa17.98■□□□□ 0.47
VPS54-201ENST00000272322 SLC16A3O15427 465 aaKnown RBP17.98■□□□□ 0.47
VPS54-201ENST00000272322 P4HBP07237 508 aaKnown RBP17.98■□□□□ 0.47
VPS54-201ENST00000272322 IBSPP21815 317 aaPredicted RBP17.98■□□□□ 0.47
VPS54-201ENST00000272322 TRIM7Q9C029 511 aa17.98■□□□□ 0.47
VPS54-201ENST00000272322 MYH11P35749 1972 aa17.98■□□□□ 0.47
VPS54-201ENST00000272322 FRMPD4Q14CM0 1322 aa17.98■□□□□ 0.47
VPS54-201ENST00000272322 PPFIA4O75335 1185 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 BMT2Q1RMZ1 405 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 KRT71Q3SY84 523 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 NBPF12Q5TAG4 269 aaPredicted RBP17.97■□□□□ 0.47
VPS54-201ENST00000272322 ZC3H3Q8IXZ2 948 aaKnown RBP17.97■□□□□ 0.47
VPS54-201ENST00000272322 IQCKQ8N0W5 287 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 LMBR1Q8WVP7 490 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 SEMA4DQ92854 862 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 CEP170P1Q96L14 293 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 AGPAT1Q99943 283 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 NOVA2Q9UNW9 492 aaKnown RBP17.97■□□□□ 0.47
VPS54-201ENST00000272322 DENND3A2RUS2 1198 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 SPOPO43791 374 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 CCNE2O96020 404 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 NR1D1P20393 614 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 FAM182AQ5T1J6 154 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 ZFYVE27Q5T4F4 411 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 PASD1Q8IV76 773 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 POMGNT1Q8WZA1 660 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms