RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 STK33Q9BYT3 514 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 ARHGEF10LQ9HCE6 1279 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 CYP26A1O43174 497 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 BFSP1Q12934 665 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 SNX1Q13596 522 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 CC2D2BQ6DHV5 1058 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 GMCL1P1Q8NEA9 526 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 ACTRT1Q8TDG2 376 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 SELENOSQ9BQE4 189 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 ZNF277Q9NRM2 450 aaPredicted RBP23.07■■□□□ 1.28
TRIM28-201ENST00000253024 CCPG1Q9ULG6 757 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 ALG6Q9Y672 507 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 HGSO14964 777 aaPredicted RBP23.06■■□□□ 1.28
TRIM28-201ENST00000253024 KIAA0754O94854 1291 aa23.06■■□□□ 1.28
TRIM28-201ENST00000253024 PRKCIP41743 596 aa23.06■■□□□ 1.28
TRIM28-201ENST00000253024 VPS41P49754 854 aa23.06■■□□□ 1.28
TRIM28-201ENST00000253024 ADCY1Q08828 1119 aa23.06■■□□□ 1.28
TRIM28-201ENST00000253024 TRIP13Q15645 432 aaPredicted RBP23.06■■□□□ 1.28
TRIM28-201ENST00000253024 PTGISQ16647 500 aa23.06■■□□□ 1.28
TRIM28-201ENST00000253024 SLC27A3Q5K4L6 730 aa23.06■■□□□ 1.28
TRIM28-201ENST00000253024 NLRP14Q86W24 1093 aa23.06■■□□□ 1.28
TRIM28-201ENST00000253024 OLIG1Q8TAK6 271 aa23.06■■□□□ 1.28
TRIM28-201ENST00000253024 PI4K2AQ9BTU6 479 aa23.06■■□□□ 1.28
TRIM28-201ENST00000253024 OLFML3Q9NRN5 406 aa23.06■■□□□ 1.28
TRIM28-201ENST00000253024 GUCY2CP25092 1073 aa23.06■■□□□ 1.28
TRIM28-201ENST00000253024 CIITAP33076 1130 aa23.06■■□□□ 1.28
TRIM28-201ENST00000253024 HSPA9P38646 679 aaKnown RBP23.06■■□□□ 1.28
TRIM28-201ENST00000253024 TMBIM4Q9HC24 238 aa23.06■■□□□ 1.28
TRIM28-201ENST00000253024 PNMA2Q9UL42 364 aa23.06■■□□□ 1.28
TRIM28-201ENST00000253024 FGFR4P22455 802 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 DR1Q01658 176 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 MOXD1Q6UVY6 613 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 SLC47A2Q86VL8 602 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 MYCBPAPQ8TBZ2 947 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 PLEKHO2Q8TD55 490 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 LMBR1Q8WVP7 490 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 RFFLQ8WZ73 363 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 NACC1Q96RE7 527 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 RAVER2Q9HCJ3 691 aaKnown RBP23.05■■□□□ 1.28
TRIM28-201ENST00000253024 KCNH7Q9NS40 1196 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 TMOD2Q9NZR1 351 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 TNFRSF8P28908 595 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 FAM102BQ5T8I3 360 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 KDM7AQ6ZMT4 941 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 FBXO25Q8TCJ0 367 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 STXBP5LQ9Y2K9 1186 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 TELO2Q9Y4R8 837 aa23.05■■□□□ 1.28
TRIM28-201ENST00000253024 DLATP10515 647 aaKnown RBP23.04■■□□□ 1.28
TRIM28-201ENST00000253024 GJC1P36383 396 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 UGCGQ16739 394 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 CBWD2Q8IUF1 395 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 TEKT3Q9BXF9 490 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 MLXIPLQ9NP71 852 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 SLC16A3O15427 465 aaKnown RBP23.04■■□□□ 1.28
TRIM28-201ENST00000253024 CAND2O75155 1236 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 GAP43P17677 238 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 SPRED3Q2MJR0 410 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 EFCAB13Q8IY85 973 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 CCDC26Q8TAB7 109 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 HES6Q96HZ4 224 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 FMO2Q99518 471 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 DDX3YO15523 660 aaKnown RBP23.04■■□□□ 1.28
TRIM28-201ENST00000253024 IFNAR2P48551 515 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 TMC3Q7Z5M5 1100 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 PCDHB18PQ96TA0 734 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 EPN3Q9H201 632 aa23.04■■□□□ 1.28
TRIM28-201ENST00000253024 SUCLA2Q9P2R7 463 aaPredicted RBP23.04■■□□□ 1.28
TRIM28-201ENST00000253024 UBR3Q6ZT12 1888 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 ZBTB48P10074 688 aaPredicted RBP23.03■■□□□ 1.28
TRIM28-201ENST00000253024 SKOR1P84550 965 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 BMT2Q1RMZ1 405 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 OTUD6AQ7L8S5 288 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 ZDHHC14Q8IZN3 488 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 AGPAT1Q99943 283 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 ZNF341Q9BYN7 854 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 TRIM7Q9C029 511 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 ZHX2Q9Y6X8 837 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 MMEP08473 750 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 LMNB1P20700 586 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 SPP2Q13103 211 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 MAPK7Q13164 816 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 C10orf76Q5T2E6 689 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 TCEAL9Q9UHQ7 104 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 GGT7Q9UJ14 662 aa23.03■■□□□ 1.28
TRIM28-201ENST00000253024 A0A087WUV0 522 aaPredicted RBP23.02■■□□□ 1.28
TRIM28-201ENST00000253024 TESPA1A2RU30 521 aaPredicted RBP23.02■■□□□ 1.28
TRIM28-201ENST00000253024 H0YGN5 161 aa23.02■■□□□ 1.28
TRIM28-201ENST00000253024 DLGAP5Q15398 846 aa23.02■■□□□ 1.28
TRIM28-201ENST00000253024 SYCE1Q8N0S2 351 aa23.02■■□□□ 1.28
TRIM28-201ENST00000253024 SLC5A5Q92911 643 aa23.02■■□□□ 1.28
TRIM28-201ENST00000253024 SERPINA10Q9UK55 444 aa23.02■■□□□ 1.28
TRIM28-201ENST00000253024 DAAM1Q9Y4D1 1078 aa23.02■■□□□ 1.28
TRIM28-201ENST00000253024 NFS1Q9Y697 457 aa23.02■■□□□ 1.28
TRIM28-201ENST00000253024 ANKRD63C9JTQ0 380 aa23.02■■□□□ 1.28
TRIM28-201ENST00000253024 COMTP21964 271 aa23.02■■□□□ 1.28
TRIM28-201ENST00000253024 VAMP7P51809 220 aa23.02■■□□□ 1.28
TRIM28-201ENST00000253024 MGARPQ8TDB4 240 aa23.02■■□□□ 1.28
TRIM28-201ENST00000253024 LRRC45Q96CN5 670 aa23.02■■□□□ 1.28
TRIM28-201ENST00000253024 MYH11P35749 1972 aa23.02■■□□□ 1.28
TRIM28-201ENST00000253024 ATP9AO75110 1047 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms