RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 K7ENM7 598 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 CLDN3O15551 220 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 DIAPH2O60879 1101 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 COMTP21964 271 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 STX2P32856 288 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 RHBDL3P58872 404 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 KYNUQ16719 465 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 ZNF449Q6P9G9 518 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 FBXO11Q86XK2 927 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 NSMCE1Q8WV22 266 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 RNF25Q96BH1 459 aaPredicted RBP12.9□□□□□ -0.34
USHBP1-201ENST00000252597 C9orf72Q96LT7 481 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 TAOK3Q9H2K8 898 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 KLHL11Q9NVR0 708 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 POLLQ9UGP5 575 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 TMEM150BA6NC51 233 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 SPAG7O75391 227 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 RPL21P46778 160 aaKnown RBP12.9□□□□□ -0.34
USHBP1-201ENST00000252597 ICA1Q05084 483 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 CERKLQ49MI3 558 aaPredicted RBP12.9□□□□□ -0.34
USHBP1-201ENST00000252597 RC3H1Q5TC82 1133 aaKnown RBP12.9□□□□□ -0.34
USHBP1-201ENST00000252597 LRCH2Q5VUJ6 765 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 KAZNQ674X7 775 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 LRRC57Q8N9N7 239 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 RFFLQ8WZ73 363 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 ARHGEF2Q92974 986 aaKnown RBP12.9□□□□□ -0.34
USHBP1-201ENST00000252597 TATDN2Q93075 761 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 RSRC1Q96IZ7 334 aaKnown RBP12.9□□□□□ -0.34
USHBP1-201ENST00000252597 INTS2Q9H0H0 1204 aaKnown RBP12.9□□□□□ -0.34
USHBP1-201ENST00000252597 TMX4Q9H1E5 349 aaPredicted RBP12.9□□□□□ -0.34
USHBP1-201ENST00000252597 GPR75-ASB3A0A0A6YYF3 556 aa12.9□□□□□ -0.35
USHBP1-201ENST00000252597 POC1B-GALNT4F8VUJ3 575 aa12.9□□□□□ -0.35
USHBP1-201ENST00000252597 RBAK-RBAKDNI3L0D1 243 aa12.9□□□□□ -0.35
USHBP1-201ENST00000252597 GAS7O60861 476 aa12.9□□□□□ -0.35
USHBP1-201ENST00000252597 ADCY8P40145 1251 aa12.9□□□□□ -0.35
USHBP1-201ENST00000252597 DLG4P78352 724 aa12.9□□□□□ -0.35
USHBP1-201ENST00000252597 EPHA7Q15375 998 aa12.9□□□□□ -0.35
USHBP1-201ENST00000252597 SWT1Q5T5J6 900 aaKnown RBP12.9□□□□□ -0.35
USHBP1-201ENST00000252597 SYN2Q92777 582 aaPredicted RBP12.9□□□□□ -0.35
USHBP1-201ENST00000252597 ZNF653Q96CK0 615 aa12.9□□□□□ -0.35
USHBP1-201ENST00000252597 KCNQ5Q9NR82 932 aa12.9□□□□□ -0.35
USHBP1-201ENST00000252597 TYW1Q9NV66 732 aaKnown RBP12.9□□□□□ -0.35
USHBP1-201ENST00000252597 ARHGEF35A5YM69 484 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 ANKRD63C9JTQ0 380 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 H0YGN5 161 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 CYP26A1O43174 497 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 LMNB1P20700 586 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 DRD4P21917 467 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 FMO5P49326 533 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 SLC12A3P55017 1021 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 LLGL2Q6P1M3 1020 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 LRIG3Q6UXM1 1119 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 ZNF572Q7Z3I7 529 aaPredicted RBP12.89□□□□□ -0.35
USHBP1-201ENST00000252597 FRMD5Q7Z6J6 570 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 CPXCR1Q8N123 301 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 MREGQ8N565 214 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 SLITRK6Q9H5Y7 841 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 YY1AP1Q9H869 796 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 METTL14Q9HCE5 456 aaKnown RBP12.89□□□□□ -0.35
USHBP1-201ENST00000252597 PNMA3Q9UL41 463 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 TTC7AQ9ULT0 858 aaPredicted RBP12.89□□□□□ -0.35
USHBP1-201ENST00000252597 NFS1Q9Y697 457 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 EMSYQ7Z589 1322 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 BTAF1O14981 1849 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.89□□□□□ -0.35
USHBP1-201ENST00000252597 THAP12O43422 761 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 APBA3O96018 575 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 DCAF12L1Q5VU92 463 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 VSIG1Q86XK7 387 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 NSRP1Q9H0G5 558 aaKnown RBP12.89□□□□□ -0.35
USHBP1-201ENST00000252597 ECT2Q9H8V3 914 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.89□□□□□ -0.35
USHBP1-201ENST00000252597 COG5Q9UP83 839 aa12.89□□□□□ -0.35
USHBP1-201ENST00000252597 DDX60Q8IY21 1712 aaKnown RBP12.89□□□□□ -0.35
USHBP1-201ENST00000252597 A0A1B0GUA9 196 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 GH1P01241 217 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 MYCNP04198 464 aaPredicted RBP12.88□□□□□ -0.35
USHBP1-201ENST00000252597 TNFRSF8P28908 595 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 HOXD13P35453 343 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 GCKP35557 465 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 PPP4CP60510 307 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 PLCB3Q01970 1234 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 PPP1R18Q6NYC8 613 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 HAUS1Q96CS2 278 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 SAAL1Q96ER3 474 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 NAP1L3Q99457 506 aaPredicted RBP12.88□□□□□ -0.35
USHBP1-201ENST00000252597 PARVGQ9HBI0 331 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 MTUS1Q9ULD2 1270 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 TMEM120BA0PK00 339 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 IGF2BP3O00425 579 aaKnown RBP eCLIP12.88□□□□□ -0.35
USHBP1-201ENST00000252597 MSH4O15457 936 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 CETN1Q12798 172 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 RBM26Q5T8P6 1007 aaKnown RBP12.88□□□□□ -0.35
USHBP1-201ENST00000252597 LMBRD2Q68DH5 695 aaPredicted RBP12.88□□□□□ -0.35
USHBP1-201ENST00000252597 TRPM8Q7Z2W7 1104 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 SLFN12Q8IYM2 578 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 FBXO41Q8TF61 875 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 RUBCNQ92622 972 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 AMNQ9BXJ7 453 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 PABPC3Q9H361 631 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms