RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 SLC4A7Q9Y6M7 1214 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 BICDL2A1A5D9 508 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 PIK3CDO00329 1044 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 STAM2O75886 525 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 SEC31AO94979 1220 aaKnown RBP9.49□□□□□ -0.89
VPS4B-201ENST00000238497 FOSP01100 380 aaPredicted RBP9.49□□□□□ -0.89
VPS4B-201ENST00000238497 RNASE9P60153 205 aaKnown RBP9.49□□□□□ -0.89
VPS4B-201ENST00000238497 CDKAL1Q5VV42 579 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 DAGLBQ8NCG7 672 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 OR8K1Q8NGG5 319 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 CAGE1Q8TC20 777 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 CCDC42Q96M95 316 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 FGFBP2Q9BYJ0 223 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 WNT8AQ9H1J5 351 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 IKZF4Q9H2S9 585 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 AZI2Q9H6S1 392 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 JADE2Q9NQC1 790 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 ABHD10Q9NUJ1 306 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 TRPC6Q9Y210 931 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.49□□□□□ -0.89
VPS4B-201ENST00000238497 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.49□□□□□ -0.89
VPS4B-201ENST00000238497 SPATA31C2B4DYI2 1134 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 POLR3GO15318 223 aaPredicted RBP9.49□□□□□ -0.89
VPS4B-201ENST00000238497 PLEKP08567 350 aaPredicted RBP9.49□□□□□ -0.89
VPS4B-201ENST00000238497 TCF7P36402 384 aaPredicted RBP9.49□□□□□ -0.89
VPS4B-201ENST00000238497 IRF2BP1Q8IU81 584 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 MYOCDQ8IZQ8 938 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 SLC43A3Q8NBI5 491 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 GIMAP8Q8ND71 665 aaPredicted RBP9.49□□□□□ -0.89
VPS4B-201ENST00000238497 RAD54LQ92698 747 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 GDAP1L1Q96MZ0 367 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 ZBED2Q9BTP6 218 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 SEMA6BQ9H3T3 888 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 DNM3Q9UQ16 869 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 GINS2Q9Y248 185 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 ADGRG1Q9Y653 693 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 EPN1Q9Y6I3 576 aaPredicted RBP9.49□□□□□ -0.89
VPS4B-201ENST00000238497 C17orf102A2RUQ5 167 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 RSPH10B2B2RC85 870 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 FAM86B1E9PN63 330 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 SRGAP2O75044 1071 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 MED24O75448 989 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 RHOBTB3O94955 611 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 GCNT3O95395 438 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 FAM86B2P0C5J1 330 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 RSPH10BP0C881 870 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 ACTN1P12814 892 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 KCNJ6P48051 423 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 NKX3-2P78367 333 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 SEMA3FQ13275 785 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 KCTD19Q17RG1 926 aaPredicted RBP9.48□□□□□ -0.89
VPS4B-201ENST00000238497 XRRA1Q6P2D8 792 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 FBXO38Q6PIJ6 1188 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 CYP26C1Q6V0L0 522 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 C16orf59Q7L2K0 433 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 DNAAF5Q86Y56 855 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 ZNF397Q8NF99 534 aaPredicted RBP9.48□□□□□ -0.89
VPS4B-201ENST00000238497 SEZ6LQ9BYH1 1024 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 GLT8D2Q9H1C3 349 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 KCNH7Q9NS40 1196 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 DUSP10Q9Y6W6 482 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 TBCAO75347 108 aaKnown RBP9.48□□□□□ -0.89
VPS4B-201ENST00000238497 F2P00734 622 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 ARP10275 920 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 DNAJB2P25686 324 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 RABGGTBP53611 331 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 GHRHRQ02643 423 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 PPP2R3AQ06190 1150 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 CEP55Q53EZ4 464 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 CCDC65Q8IXS2 484 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 SEPT1Q8WYJ6 367 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 GPRASP2Q96D09 838 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 MAP7D2Q96T17 732 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 DUSP9Q99956 384 aaKnown RBP9.48□□□□□ -0.89
VPS4B-201ENST00000238497 FAM49AQ9H0Q0 323 aaPredicted RBP9.48□□□□□ -0.89
VPS4B-201ENST00000238497 RNPEPQ9H4A4 650 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 JPH1Q9HDC5 661 aaPredicted RBP9.48□□□□□ -0.89
VPS4B-201ENST00000238497 GTF2IRD1Q9UHL9 959 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 MSRAQ9UJ68 235 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 PRUNE2Q8WUY3 3088 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 SMIM10L2AP0DMW4 78 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 SMIM10L2BP0DMW5 78 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 PBX2P40425 430 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 PRPHP41219 470 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 COASYQ13057 564 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 SPA17Q15506 151 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 TTI2Q6NXR4 508 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 MYCT1Q8N699 235 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 GPR20Q99678 358 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 MXRA8Q9BRK3 442 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 CERS4Q9HA82 394 aa9.48□□□□□ -0.89
VPS4B-201ENST00000238497 SEPT11Q9NVA2 429 aaKnown RBP9.48□□□□□ -0.89
VPS4B-201ENST00000238497 TREHO43280 583 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 IGFBP4P22692 258 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 TBX2Q13207 712 aaPredicted RBP9.47□□□□□ -0.89
VPS4B-201ENST00000238497 ADAM9Q13443 819 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 PPP1R18Q6NYC8 613 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 TRIM65Q6PJ69 517 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 APTXQ7Z2E3 356 aaKnown RBP9.47□□□□□ -0.89
VPS4B-201ENST00000238497 TMEM139Q8IV31 216 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms