RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 NDUFA10O95299 355 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 NTN1O95631 604 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 SOD2P04179 222 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 JUNP05412 331 aaKnown RBP1.11□□□□□ -2.23
VPS35-212ENST00000640313 GNAT2P19087 354 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 HK1P19367 917 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 APEX1P27695 318 aaKnown RBP1.11□□□□□ -2.23
VPS35-212ENST00000640313 TKTP29401 623 aaKnown RBP1.11□□□□□ -2.23
VPS35-212ENST00000640313 GPR85P60893 370 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 SIM1P81133 766 aaPredicted RBP1.11□□□□□ -2.23
VPS35-212ENST00000640313 GUCY1B3Q02153 619 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 MAP3K12Q12852 859 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 FHL1Q13642 323 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 SPIDRQ14159 915 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 GPR19Q15760 415 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 VPS72Q15906 364 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 KRTAP27-1Q3LI81 207 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 LDLRAD1Q5T700 205 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 ARHGAP36Q6ZRI8 547 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 PTF1AQ7RTS3 328 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 ARHGEF25Q86VW2 580 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 IFNL3Q8IZI9 196 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 CMTM4Q8IZR5 234 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 PUM2Q8TB72 1066 aaKnown RBP eCLIP1.11□□□□□ -2.23
VPS35-212ENST00000640313 SLC7A14Q8TBB6 771 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 RASGRP4Q8TDF6 673 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 NKD2Q969F2 451 aaPredicted RBP1.11□□□□□ -2.23
VPS35-212ENST00000640313 ARL8AQ96BM9 186 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 PPP1R10Q96QC0 940 aaKnown RBP1.11□□□□□ -2.23
VPS35-212ENST00000640313 NDC1Q9BTX1 674 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 HAPLN2Q9GZV7 340 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 IPPKQ9H8X2 491 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 KIAA1586Q9HCI6 787 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 SAE1Q9UBE0 346 aaPredicted RBP1.11□□□□□ -2.23
VPS35-212ENST00000640313 EIF2B4Q9UI10 523 aaKnown RBP1.11□□□□□ -2.23
VPS35-212ENST00000640313 RCAN3Q9UKA8 241 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 DENND2AQ9ULE3 1009 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 CHST2Q9Y4C5 530 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 PATL2C9JE40 543 aaKnown RBP1.1□□□□□ -2.23
VPS35-212ENST00000640313 DIRC3C9JPN6 131 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 GOLGA6L22H0YM25 854 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 TP73O15350 636 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 MTSS1O43312 755 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 HOXA3O43365 443 aaPredicted RBP1.1□□□□□ -2.23
VPS35-212ENST00000640313 SUSD5O60279 629 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 CLASP2O75122 1294 aaKnown RBP1.1□□□□□ -2.23
VPS35-212ENST00000640313 NCR1O76036 304 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 AMY2AP04746 511 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 AMY2BP19961 511 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 GRIA2P42262 883 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 NPEPPSP55786 919 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 RAPGEF1Q13905 1077 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 DDB1Q16531 1140 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 FIGNQ5HY92 759 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 STYK1Q6J9G0 422 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 ARMC6Q6NXE6 501 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 KCNT2Q6UVM3 1135 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 ZNF788Q6ZQV5 615 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 KRTAP5-2Q701N4 177 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 USP53Q70EK8 1073 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 SND1Q7KZF4 910 aaKnown RBP eCLIP1.1□□□□□ -2.23
VPS35-212ENST00000640313 GDF7Q7Z4P5 450 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 BMP8AQ7Z5Y6 402 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 CLEC14AQ86T13 490 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 PLXDC1Q8IUK5 500 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 FAM169BQ8N8A8 192 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 PLA2G15Q8NCC3 412 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 GLB1L3Q8NCI6 653 aaPredicted RBP1.1□□□□□ -2.23
VPS35-212ENST00000640313 SMRP1Q8NCR6 262 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 OR52N2Q8NGI0 321 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 CALML6Q8TD86 181 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 ASB15Q8WXK1 588 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 ZNF48Q96MX3 618 aaPredicted RBP1.1□□□□□ -2.23
VPS35-212ENST00000640313 ALOXE3Q9BYJ1 711 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 KRTAP4-3Q9BYR4 195 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 ENKD1Q9H0I2 346 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 VPS33BQ9H267 617 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 MTMR4Q9NYA4 1195 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 FOXJ2Q9P0K8 574 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 SLC17A6Q9P2U8 582 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 ARPP21Q9UBL0 812 aaPredicted RBP1.1□□□□□ -2.23
VPS35-212ENST00000640313 DDX41Q9UJV9 622 aaKnown RBP1.1□□□□□ -2.23
VPS35-212ENST00000640313 WDR3Q9UNX4 943 aaKnown RBP eCLIP1.1□□□□□ -2.23
VPS35-212ENST00000640313 ASB1Q9Y576 335 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 ZNF804BA4D1E1 1349 aa1.1□□□□□ -2.23
VPS35-212ENST00000640313 PRAMEF22A3QJZ6 481 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 PRAMEF25A6NGN4 478 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 INSIG1O15503 277 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 STC2O76061 302 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 TOX4O94842 621 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 HLA-DOAP06340 250 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 MMEP08473 750 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 ZSCAN20P17040 1043 aaPredicted RBP1.09□□□□□ -2.23
VPS35-212ENST00000640313 ERCC3P19447 782 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 DDX6P26196 483 aaKnown RBP eCLIP1.09□□□□□ -2.23
VPS35-212ENST00000640313 APOBEC3AP31941 199 aaPredicted RBP1.09□□□□□ -2.23
VPS35-212ENST00000640313 CCKARP32238 428 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 ZNF76P36508 570 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 KIR2DL3P43628 341 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 PROK1P58294 105 aa1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms