RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 DOCK8Q8NF50 2099 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 DCDC2BA2VCK2 349 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 SPDYE3A6NKU9 549 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 SPDYE4A6NLX3 237 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 SPTLC1O15269 473 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 CCNE2O96020 404 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 LMNB2Q03252 620 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 UBE2SQ16763 222 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 BMP2KLQ5H9B9 411 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 ABHD15Q6UXT9 468 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 CATIPQ7Z7H3 387 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 CMASQ8NFW8 434 aaPredicted RBP18.54■□□□□ 0.56
CLN3-264ENST00000637985 PJA1Q8NG27 643 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 IGDCC4Q8TDY8 1250 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 BCL7CQ8WUZ0 217 aaPredicted RBP18.54■□□□□ 0.56
CLN3-264ENST00000637985 KLHL5Q96PQ7 755 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 VN1R3Q9BXE9 311 aa18.54■□□□□ 0.56
CLN3-264ENST00000637985 WDR6Q9NNW5 1121 aaKnown RBP18.54■□□□□ 0.56
CLN3-264ENST00000637985 SEC63Q9UGP8 760 aaKnown RBP18.54■□□□□ 0.56
CLN3-264ENST00000637985 CARNS1A5YM72 827 aa18.53■□□□□ 0.56
CLN3-264ENST00000637985 BACH1O14867 736 aa18.53■□□□□ 0.56
CLN3-264ENST00000637985 ZC3H11AO75152 810 aaKnown RBP eCLIP18.53■□□□□ 0.56
CLN3-264ENST00000637985 ATP4AP20648 1035 aa18.53■□□□□ 0.56
CLN3-264ENST00000637985 EIF4BP23588 611 aaKnown RBP18.53■□□□□ 0.56
CLN3-264ENST00000637985 GBP2P32456 591 aaPredicted RBP18.53■□□□□ 0.56
CLN3-264ENST00000637985 ANTXR2P58335 489 aa18.53■□□□□ 0.56
CLN3-264ENST00000637985 FAM160B1Q5W0V3 765 aa18.53■□□□□ 0.56
CLN3-264ENST00000637985 CASC1Q6TDU7 716 aa18.53■□□□□ 0.56
CLN3-264ENST00000637985 CCDC60Q8IWA6 550 aaPredicted RBP18.53■□□□□ 0.56
CLN3-264ENST00000637985 METTL13Q8N6R0 699 aa18.53■□□□□ 0.56
CLN3-264ENST00000637985 MAP3K14Q99558 947 aa18.53■□□□□ 0.56
CLN3-264ENST00000637985 RHOBTB2Q9BYZ6 727 aa18.53■□□□□ 0.56
CLN3-264ENST00000637985 ADAMTS10Q9H324 1103 aa18.53■□□□□ 0.56
CLN3-264ENST00000637985 AGO4Q9HCK5 861 aaKnown RBP18.53■□□□□ 0.56
CLN3-264ENST00000637985 GALTP07902 379 aa18.52■□□□□ 0.56
CLN3-264ENST00000637985 CNPP09543 421 aaKnown RBP18.52■□□□□ 0.56
CLN3-264ENST00000637985 TGM1P22735 817 aa18.52■□□□□ 0.56
CLN3-264ENST00000637985 KLRC2P26717 231 aa18.52■□□□□ 0.56
CLN3-264ENST00000637985 MCM5P33992 734 aa18.52■□□□□ 0.56
CLN3-264ENST00000637985 NLRP11P59045 1033 aaKnown RBP18.52■□□□□ 0.56
CLN3-264ENST00000637985 DCLRE1AQ6PJP8 1040 aa18.52■□□□□ 0.56
CLN3-264ENST00000637985 CYP26C1Q6V0L0 522 aa18.52■□□□□ 0.56
CLN3-264ENST00000637985 TMTC2Q8N394 836 aa18.52■□□□□ 0.56
CLN3-264ENST00000637985 RSPH1Q8WYR4 309 aa18.52■□□□□ 0.56
CLN3-264ENST00000637985 STAMQ92783 540 aa18.52■□□□□ 0.56
CLN3-264ENST00000637985 MYADMQ96S97 322 aa18.52■□□□□ 0.56
CLN3-264ENST00000637985 EMILIN2Q9BXX0 1053 aa18.52■□□□□ 0.56
CLN3-264ENST00000637985 FOXQ1Q9C009 403 aa18.52■□□□□ 0.56
CLN3-264ENST00000637985 SLC2A4RGQ9NR83 387 aa18.52■□□□□ 0.56
CLN3-264ENST00000637985 FBXO4Q9UKT5 387 aa18.52■□□□□ 0.56
CLN3-264ENST00000637985 LILRB3O75022 631 aa18.51■□□□□ 0.55
CLN3-264ENST00000637985 LRRN2O75325 713 aa18.51■□□□□ 0.55
CLN3-264ENST00000637985 STARD6P59095 220 aa18.51■□□□□ 0.55
CLN3-264ENST00000637985 PDXDC2PQ6P474 469 aa18.51■□□□□ 0.55
CLN3-264ENST00000637985 NRDE2Q9H7Z3 1164 aa18.51■□□□□ 0.55
CLN3-264ENST00000637985 LY9Q9HBG7 655 aa18.51■□□□□ 0.55
CLN3-264ENST00000637985 ZNF302Q9NR11 478 aa18.51■□□□□ 0.55
CLN3-264ENST00000637985 PCDHGA2Q9Y5H1 932 aa18.51■□□□□ 0.55
CLN3-264ENST00000637985 SLC27A2O14975 620 aa18.5■□□□□ 0.55
CLN3-264ENST00000637985 DDAH1O94760 285 aa18.5■□□□□ 0.55
CLN3-264ENST00000637985 NECTIN1Q15223 517 aa18.5■□□□□ 0.55
CLN3-264ENST00000637985 CEP55Q53EZ4 464 aa18.5■□□□□ 0.55
CLN3-264ENST00000637985 ZNF710Q8N1W2 664 aa18.5■□□□□ 0.55
CLN3-264ENST00000637985 BBXQ8WY36 941 aaPredicted RBP18.5■□□□□ 0.55
CLN3-264ENST00000637985 SECISBP2LQ93073 1101 aaKnown RBP18.5■□□□□ 0.55
CLN3-264ENST00000637985 TMEM87BQ96K49 555 aa18.5■□□□□ 0.55
CLN3-264ENST00000637985 LZTS2Q9BRK4 669 aa18.5■□□□□ 0.55
CLN3-264ENST00000637985 ANO2Q9NQ90 1003 aa18.5■□□□□ 0.55
CLN3-264ENST00000637985 TBC1D13Q9NVG8 400 aa18.5■□□□□ 0.55
CLN3-264ENST00000637985 DACT1Q9NYF0 836 aa18.5■□□□□ 0.55
CLN3-264ENST00000637985 CLUHO75153 1309 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 MIA3Q5JRA6 1907 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 FAM208BQ5VWN6 2430 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 CCDC195A0A1B0GUA6 201 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 ANHXE9PGG2 379 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 MEIS1O00470 390 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 PRC1O43663 620 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 KIF5BP33176 963 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 CLCN3P51790 818 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 CREB3L3Q68CJ9 461 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 SWSAP1Q6NVH7 229 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 ZNF654Q8IZM8 581 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 LINC01465Q8N7H1 131 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 ZBTB44Q8NCP5 570 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 CTCFLQ8NI51 663 aaPredicted RBP18.49■□□□□ 0.55
CLN3-264ENST00000637985 ATRIPQ8WXE1 791 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 CHAMP1Q96JM3 812 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 EPC1Q9H2F5 836 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 MAN1C1Q9NR34 630 aa18.49■□□□□ 0.55
CLN3-264ENST00000637985 MAGEB2O15479 319 aa18.48■□□□□ 0.55
CLN3-264ENST00000637985 LILRB5O75023 590 aa18.48■□□□□ 0.55
CLN3-264ENST00000637985 LAMP2P13473 410 aa18.48■□□□□ 0.55
CLN3-264ENST00000637985 DARSP14868 501 aaKnown RBP18.48■□□□□ 0.55
CLN3-264ENST00000637985 LIFRP42702 1097 aa18.48■□□□□ 0.55
CLN3-264ENST00000637985 RNF20Q5VTR2 975 aa18.48■□□□□ 0.55
CLN3-264ENST00000637985 SRBD1Q8N5C6 995 aaKnown RBP18.48■□□□□ 0.55
CLN3-264ENST00000637985 NELL1Q92832 810 aa18.48■□□□□ 0.55
CLN3-264ENST00000637985 SHDQ96IW2 340 aa18.48■□□□□ 0.55
CLN3-264ENST00000637985 TRAIPQ9BWF2 469 aa18.48■□□□□ 0.55
CLN3-264ENST00000637985 SPATA6Q9NWH7 488 aaPredicted RBP18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms