RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 PFASO15067 1338 aa20.11■□□□□ 0.81
CLN3-263ENST00000637871 SOWAHBA6NEL2 793 aa20.1■□□□□ 0.81
CLN3-263ENST00000637871 HOXD13P35453 343 aa20.1■□□□□ 0.81
CLN3-263ENST00000637871 MRPS9P82933 396 aaKnown RBP20.1■□□□□ 0.81
CLN3-263ENST00000637871 ARHGEF16Q5VV41 709 aa20.1■□□□□ 0.81
CLN3-263ENST00000637871 RSRC2Q7L4I2 434 aaKnown RBP20.1■□□□□ 0.81
CLN3-263ENST00000637871 ABRAQ8N0Z2 381 aa20.1■□□□□ 0.81
CLN3-263ENST00000637871 SOCS4Q8WXH5 440 aa20.1■□□□□ 0.81
CLN3-263ENST00000637871 TAAR1Q96RJ0 339 aa20.1■□□□□ 0.81
CLN3-263ENST00000637871 TMEM206Q9H813 350 aa20.1■□□□□ 0.81
CLN3-263ENST00000637871 ANKEF1Q9NU02 776 aa20.1■□□□□ 0.81
CLN3-263ENST00000637871 AIPL1Q9NZN9 384 aa20.1■□□□□ 0.81
CLN3-263ENST00000637871 FLRT1Q9NZU1 646 aa20.1■□□□□ 0.81
CLN3-263ENST00000637871 GUCA1BQ9UMX6 200 aa20.1■□□□□ 0.81
CLN3-263ENST00000637871 MCM3APO60318 1980 aa20.1■□□□□ 0.81
CLN3-263ENST00000637871 LRRC53A6NM62 1247 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 RSPH10B2B2RC85 870 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 RBAK-RBAKDNI3L0D1 243 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 AKR1B10O60218 316 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 RSPH10BP0C881 870 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 ELNP15502 786 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 H2AFXP16104 143 aaPredicted RBP20.09■□□□□ 0.81
CLN3-263ENST00000637871 FAM133AQ8N9E0 248 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 RPGRIP1Q96KN7 1286 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 LSM14BQ9BX40 385 aaKnown RBP20.09■□□□□ 0.81
CLN3-263ENST00000637871 IRX2Q9BZI1 471 aaPredicted RBP20.09■□□□□ 0.81
CLN3-263ENST00000637871 ARHGAP20Q9P2F6 1191 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 PTCH2Q9Y6C5 1203 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 WDR64B1ANS9 1081 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 PJA2O43164 708 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 ATP8B1O43520 1251 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 RGS2P41220 211 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 KIF11P52732 1056 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 PSMC5P62195 406 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 PPP2R5AQ15172 486 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 ZNF792Q3KQV3 632 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 ODR4Q5SWX8 454 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 C10orf76Q5T2E6 689 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 ZNF746Q6NUN9 644 aaPredicted RBP20.09■□□□□ 0.81
CLN3-263ENST00000637871 PADI6Q6TGC4 694 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 GBP6Q6ZN66 633 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 TRIM58Q8NG06 486 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 NSUN6Q8TEA1 469 aaKnown RBP20.09■□□□□ 0.81
CLN3-263ENST00000637871 APBA2Q99767 749 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 STRA6Q9BX79 667 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 GBP3Q9H0R5 595 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 ST6GALNAC4Q9H4F1 302 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 PCDHA13Q9Y5I0 950 aa20.09■□□□□ 0.81
CLN3-263ENST00000637871 LRRC37A2A6NM11 1700 aa20.08■□□□□ 0.81
CLN3-263ENST00000637871 TACC1O75410 805 aa20.08■□□□□ 0.8
CLN3-263ENST00000637871 EIF4A3P38919 411 aaKnown RBP20.08■□□□□ 0.8
CLN3-263ENST00000637871 NAA30Q147X3 362 aaPredicted RBP20.08■□□□□ 0.8
CLN3-263ENST00000637871 EXOC3L4Q17RC7 722 aa20.08■□□□□ 0.8
CLN3-263ENST00000637871 PAPD7Q5XG87 772 aaKnown RBP20.08■□□□□ 0.8
CLN3-263ENST00000637871 VSIG10LQ86VR7 867 aa20.08■□□□□ 0.8
CLN3-263ENST00000637871 RNF10Q8N5U6 811 aaKnown RBP20.08■□□□□ 0.8
CLN3-263ENST00000637871 MAML3Q96JK9 1138 aa20.08■□□□□ 0.8
CLN3-263ENST00000637871 DRC1Q96MC2 740 aa20.08■□□□□ 0.8
CLN3-263ENST00000637871 IFIH1Q9BYX4 1025 aaKnown RBP20.08■□□□□ 0.8
CLN3-263ENST00000637871 DMAC2Q9NW81 257 aa20.08■□□□□ 0.8
CLN3-263ENST00000637871 KCNG1Q9UIX4 513 aa20.08■□□□□ 0.8
CLN3-263ENST00000637871 FRMD4BQ9Y2L6 1034 aa20.08■□□□□ 0.8
CLN3-263ENST00000637871 NKRFO15226 690 aaKnown RBP eCLIP20.07■□□□□ 0.8
CLN3-263ENST00000637871 TGFB1I1O43294 461 aa20.07■□□□□ 0.8
CLN3-263ENST00000637871 NOL4O94818 638 aa20.07■□□□□ 0.8
CLN3-263ENST00000637871 EIF2AK2P19525 551 aaKnown RBP20.07■□□□□ 0.8
CLN3-263ENST00000637871 ABCD1P33897 745 aa20.07■□□□□ 0.8
CLN3-263ENST00000637871 CHMP4BP1P59074 171 aa20.07■□□□□ 0.8
CLN3-263ENST00000637871 ASTE1Q2TB18 679 aaPredicted RBP20.07■□□□□ 0.8
CLN3-263ENST00000637871 CTU1Q7Z7A3 348 aaKnown RBP20.07■□□□□ 0.8
CLN3-263ENST00000637871 C12orf56Q8IXR9 622 aa20.07■□□□□ 0.8
CLN3-263ENST00000637871 SMAP1Q8IYB5 467 aaPredicted RBP20.07■□□□□ 0.8
CLN3-263ENST00000637871 IL31RAQ8NI17 732 aa20.07■□□□□ 0.8
CLN3-263ENST00000637871 RAET1EQ8TD07 263 aa20.07■□□□□ 0.8
CLN3-263ENST00000637871 TRIB2Q92519 343 aa20.07■□□□□ 0.8
CLN3-263ENST00000637871 SECISBP2LQ93073 1101 aaKnown RBP20.07■□□□□ 0.8
CLN3-263ENST00000637871 VTI1AQ96AJ9 217 aa20.07■□□□□ 0.8
CLN3-263ENST00000637871 ZFP91Q96JP5 570 aaPredicted RBP20.07■□□□□ 0.8
CLN3-263ENST00000637871 FIZ1Q96SL8 496 aa20.07■□□□□ 0.8
CLN3-263ENST00000637871 ATP8B3O60423 1300 aa20.07■□□□□ 0.8
CLN3-263ENST00000637871 EPHB6O15197 1021 aa20.06■□□□□ 0.8
CLN3-263ENST00000637871 PPP1R37O75864 691 aa20.06■□□□□ 0.8
CLN3-263ENST00000637871 AKAP3O75969 853 aa20.06■□□□□ 0.8
CLN3-263ENST00000637871 PRLRP16471 622 aa20.06■□□□□ 0.8
CLN3-263ENST00000637871 HOXD10P28358 340 aa20.06■□□□□ 0.8
CLN3-263ENST00000637871 POLR2FP61218 127 aaKnown RBP20.06■□□□□ 0.8
CLN3-263ENST00000637871 TRIM32Q13049 653 aa20.06■□□□□ 0.8
CLN3-263ENST00000637871 ITGB3BPQ13352 177 aaPredicted RBP20.06■□□□□ 0.8
CLN3-263ENST00000637871 BANK1Q8NDB2 785 aa20.06■□□□□ 0.8
CLN3-263ENST00000637871 CCDC43Q96MW1 224 aaKnown RBP20.06■□□□□ 0.8
CLN3-263ENST00000637871 SAMM50Q9Y512 469 aa20.06■□□□□ 0.8
CLN3-263ENST00000637871 NFASCO94856 1347 aa20.06■□□□□ 0.8
CLN3-263ENST00000637871 CTAGE15A4D2H0 777 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 MAPK13O15264 365 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 HIP1RO75146 1068 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 GNRH1P01148 92 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 NR3C2P08235 984 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 HOXC6P09630 235 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 CTAGE8P0CG41 777 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 MAGEA1P43355 309 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms