RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 EIF4E1BA6NMX2 242 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 E7EVH7 732 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 PDE2AO00408 941 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 TBX3O15119 743 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 MEFVO15553 781 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 KIF4AO95239 1232 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 FTCDO95954 541 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 RFX1P22670 979 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 CXCR5P32302 372 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 KLK7P49862 253 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 NPEPPSP55786 919 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 SATB1Q01826 763 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 SPDYCQ5MJ68 293 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 CEP128Q6ZU80 1094 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 YTHDF3Q7Z739 585 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 CPLX4Q7Z7G2 160 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 RPAINQ86UA6 219 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 CACNA2D3Q8IZS8 1091 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 USP38Q8NB14 1042 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 MTMR9Q96QG7 549 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 TSPAN18Q96SJ8 248 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 AIPL1Q9NZN9 384 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 MTUS1Q9ULD2 1270 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 KIAA1024Q9UPX6 916 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 FRMD4BQ9Y2L6 1034 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 PCDHGC5Q9Y5F6 944 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 A0A0G2JMZ2 1700 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 LRRC37A2A6NM11 1700 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 CCDC169A6NNP5 214 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 STK25O00506 426 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 PDXKO00764 312 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 HSPA9P38646 679 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 MDH1P40925 334 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 ATP1A2P50993 1020 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 MARSP56192 900 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 PDCLQ13371 301 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 DCAF17Q5H9S7 520 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 MFSD14BQ5SR56 506 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 MEI1Q5TIA1 1274 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 GKAP1Q5VSY0 366 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 TBC1D9BQ66K14 1250 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 ALKBH5Q6P6C2 394 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 LRRC55Q6ZSA7 311 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 FAM133AQ8N9E0 248 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 ACTRT1Q8TDG2 376 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 DCAF4Q8WV16 495 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 BAP1Q92560 729 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 CEP95Q96GE4 821 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 ZIM3Q96PE6 472 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 MYCBPQ99417 103 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 TLR10Q9BXR5 811 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 SEPT11Q9NVA2 429 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 PLAAQ9Y263 795 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 RCCD1A6NED2 376 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 FAM187AA6NFU0 413 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 USP17L5A8MUK1 530 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 C6orf229H3BNL8 230 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 ZBTB5O15062 677 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 EZRP15311 586 aaKnown RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 TNFAIP3P21580 790 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 HPDP32754 393 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 GMPSP49915 693 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 IRF5Q13568 498 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 LRRC41Q15345 812 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 SEL1L2Q5TEA6 688 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 KLHDC7AQ5VTJ3 777 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 TAOK1Q7L7X3 1001 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 NLRP14Q86W24 1093 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 TRIM59Q8IWR1 403 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 SDR16C5Q8N3Y7 309 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 RIN2Q8WYP3 895 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 CDCA5Q96FF9 252 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 EEF2KMTQ96G04 330 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 FAM20AQ96MK3 541 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 RNF208Q9H0X6 261 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 BLOC1S4Q9NUP1 217 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 TYW1Q9NV66 732 aaKnown RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 SAMD15Q9P1V8 674 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 SUCLA2Q9P2R7 463 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 TCEAL9Q9UHQ7 104 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 DMGDHQ9UI17 866 aaKnown RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 DUSP10Q9Y6W6 482 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 UBE4BO95155 1302 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 FRMPD2Q68DX3 1309 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 POTEMA6NI47 508 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 MIF4GDA9UHW6 222 aaKnown RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 CYTH3O43739 400 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 FAM107AO95990 144 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 PLEKP08567 350 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 BCRP11274 1271 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 SCP2P22307 547 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 GUCY2CP25092 1073 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 HOXA10P31260 410 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 LSP1P33241 339 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 BRCA1P38398 1863 aaKnown RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 ZNF543Q08ER8 600 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 KCNH2Q12809 1159 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms