RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 CCDC155Q8N6L0 562 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 PPTC7Q8NI37 304 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 ASAP3Q8TDY4 903 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 AFG1LQ8WV93 481 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 HVCN1Q96D96 273 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 GJD2Q9UKL4 321 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 FAM184BQ9ULE4 1060 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 SIK3Q9Y2K2 1263 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 PPME1Q9Y570 386 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 ZBTB42B2RXF5 422 aa18.49■□□□□ 0.55
CLN3-252ENST00000636907 LGALS2P05162 132 aa18.49■□□□□ 0.55
CLN3-252ENST00000636907 CYP2B6P20813 491 aa18.49■□□□□ 0.55
CLN3-252ENST00000636907 GLRA2P23416 452 aa18.49■□□□□ 0.55
CLN3-252ENST00000636907 CTGFP29279 349 aa18.49■□□□□ 0.55
CLN3-252ENST00000636907 PSMC2P35998 433 aaKnown RBP18.49■□□□□ 0.55
CLN3-252ENST00000636907 CCL14Q16627 93 aa18.49■□□□□ 0.55
CLN3-252ENST00000636907 PRAMEF19Q5SWL8 479 aa18.49■□□□□ 0.55
CLN3-252ENST00000636907 IQSEC1Q6DN90 963 aa18.49■□□□□ 0.55
CLN3-252ENST00000636907 MAP4K3Q8IVH8 894 aa18.49■□□□□ 0.55
CLN3-252ENST00000636907 PCMTD1Q96MG8 357 aaPredicted RBP18.49■□□□□ 0.55
CLN3-252ENST00000636907 PANX2Q96RD6 677 aa18.49■□□□□ 0.55
CLN3-252ENST00000636907 BAG1Q99933 345 aaPredicted RBP18.49■□□□□ 0.55
CLN3-252ENST00000636907 TTYH3Q9C0H2 523 aa18.49■□□□□ 0.55
CLN3-252ENST00000636907 METTL14Q9HCE5 456 aaKnown RBP18.49■□□□□ 0.55
CLN3-252ENST00000636907 TTC26A0AVF1 554 aa18.48■□□□□ 0.55
CLN3-252ENST00000636907 TNPO2O14787 897 aaKnown RBP18.48■□□□□ 0.55
CLN3-252ENST00000636907 ADCY6O43306 1168 aa18.48■□□□□ 0.55
CLN3-252ENST00000636907 RGS2P41220 211 aa18.48■□□□□ 0.55
CLN3-252ENST00000636907 MYBPC2Q14324 1141 aa18.48■□□□□ 0.55
CLN3-252ENST00000636907 FAM186BQ8IYM0 893 aa18.48■□□□□ 0.55
CLN3-252ENST00000636907 BORCS6Q96GS4 357 aa18.48■□□□□ 0.55
CLN3-252ENST00000636907 MKNK1Q9BUB5 465 aa18.48■□□□□ 0.55
CLN3-252ENST00000636907 NUP58Q9BVL2 599 aa18.48■□□□□ 0.55
CLN3-252ENST00000636907 SPTLC3Q9NUV7 552 aa18.48■□□□□ 0.55
CLN3-252ENST00000636907 CGNQ9P2M7 1197 aaKnown RBP18.48■□□□□ 0.55
CLN3-252ENST00000636907 ARHGAP28Q9P2N2 729 aa18.48■□□□□ 0.55
CLN3-252ENST00000636907 EXOC7Q9UPT5 735 aa18.48■□□□□ 0.55
CLN3-252ENST00000636907 TRPC6Q9Y210 931 aa18.48■□□□□ 0.55
CLN3-252ENST00000636907 AOC2O75106 756 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 SNRPFP62306 86 aaKnown RBP18.47■□□□□ 0.55
CLN3-252ENST00000636907 KCNMA1Q12791 1236 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 KCNH2Q12809 1159 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 C12orf56Q8IXR9 622 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 TMEM174Q8WUU8 243 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 SOCS4Q8WXH5 440 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 CCDC51Q96ER9 411 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 CBWD1Q9BRT8 395 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 ERAP1Q9NZ08 941 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 CAPN11Q9UMQ6 739 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 HBP1O60381 514 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 STX10O60499 249 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 EXOC3O60645 756 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 XRCC5P13010 732 aaKnown RBP18.47■□□□□ 0.55
CLN3-252ENST00000636907 TRIM21P19474 475 aaKnown RBP18.47■□□□□ 0.55
CLN3-252ENST00000636907 CYP2C19P33261 490 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 KRT9P35527 623 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 PPP2R3AQ06190 1150 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 DRP2Q13474 957 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 FIGNQ5HY92 759 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 OLFML2BQ68BL8 750 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 TAS1R3Q7RTX0 852 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 RETREG2Q8NC44 543 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 OR6J1Q8NGC5 347 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 APBA2Q99767 749 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 RNPEPQ9H4A4 650 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 PCIF1Q9H4Z3 704 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 ABHD10Q9NUJ1 306 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 KCNG1Q9UIX4 513 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 FRMD4BQ9Y2L6 1034 aa18.47■□□□□ 0.55
CLN3-252ENST00000636907 ANKRD63C9JTQ0 380 aa18.46■□□□□ 0.55
CLN3-252ENST00000636907 H0YCG3 227 aa18.46■□□□□ 0.55
CLN3-252ENST00000636907 ZNF286BP0CG31 522 aa18.46■□□□□ 0.55
CLN3-252ENST00000636907 ZNF865P0CJ78 1059 aaPredicted RBP18.46■□□□□ 0.55
CLN3-252ENST00000636907 NAMPTP43490 491 aa18.46■□□□□ 0.55
CLN3-252ENST00000636907 KCNJ6P48051 423 aa18.46■□□□□ 0.55
CLN3-252ENST00000636907 TNFAIP2Q03169 654 aa18.46■□□□□ 0.55
CLN3-252ENST00000636907 NOGQ13253 232 aa18.46■□□□□ 0.55
CLN3-252ENST00000636907 MKRN4PQ13434 485 aaPredicted RBP18.46■□□□□ 0.55
CLN3-252ENST00000636907 IRF5Q13568 498 aa18.46■□□□□ 0.55
CLN3-252ENST00000636907 PPP2R5AQ15172 486 aa18.46■□□□□ 0.55
CLN3-252ENST00000636907 DCAF17Q5H9S7 520 aaPredicted RBP18.46■□□□□ 0.55
CLN3-252ENST00000636907 TRAPPC12Q8WVT3 735 aa18.46■□□□□ 0.55
CLN3-252ENST00000636907 SLC35C1Q96A29 364 aa18.46■□□□□ 0.55
CLN3-252ENST00000636907 MMRN2Q9H8L6 949 aa18.46■□□□□ 0.55
CLN3-252ENST00000636907 LUC7L2Q9Y383 392 aaKnown RBP18.46■□□□□ 0.55
CLN3-252ENST00000636907 IGKV6-21A0A0C4DH24 114 aa18.45■□□□□ 0.54
CLN3-252ENST00000636907 LRRIQ4A6NIV6 560 aa18.45■□□□□ 0.54
CLN3-252ENST00000636907 ARHGAP6O43182 974 aa18.45■□□□□ 0.54
CLN3-252ENST00000636907 PPFIA4O75335 1185 aa18.45■□□□□ 0.54
CLN3-252ENST00000636907 ALDH1A1P00352 501 aa18.45■□□□□ 0.54
CLN3-252ENST00000636907 AFPP02771 609 aaKnown RBP18.45■□□□□ 0.54
CLN3-252ENST00000636907 MMP3P08254 477 aa18.45■□□□□ 0.54
CLN3-252ENST00000636907 E4F1Q66K89 784 aaPredicted RBP18.45■□□□□ 0.54
CLN3-252ENST00000636907 KCNN1Q92952 543 aa18.45■□□□□ 0.54
CLN3-252ENST00000636907 C16orf70Q9BSU1 422 aa18.45■□□□□ 0.54
CLN3-252ENST00000636907 FAM207AQ9NSI2 230 aaPredicted RBP18.45■□□□□ 0.54
CLN3-252ENST00000636907 AGPAT5Q9NUQ2 364 aa18.45■□□□□ 0.54
CLN3-252ENST00000636907 HSPBP1Q9NZL4 362 aa18.45■□□□□ 0.54
CLN3-252ENST00000636907 MGAMO43451 1857 aa18.45■□□□□ 0.54
CLN3-252ENST00000636907 USP27XA6NNY8 438 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms