RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CDC42EP1Q00587 391 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 TAP1Q03518 808 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 AAK1Q2M2I8 961 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 TMEM119Q4V9L6 283 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 FBXO47Q5MNV8 452 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 MAEAQ7L5Y9 396 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 KCTD17Q8N5Z5 321 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 MCPH1Q8NEM0 835 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 EPSTI1Q96J88 318 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 NLRP4Q96MN2 994 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 PNMA5Q96PV4 448 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 IFIH1Q9BYX4 1025 aaKnown RBP20.09■□□□□ 0.81
CLN3-239ENST00000628023 CCSER1Q9C0I3 900 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 PLCG1P19174 1290 aa20.08■□□□□ 0.81
CLN3-239ENST00000628023 GPC3P51654 580 aa20.08■□□□□ 0.81
CLN3-239ENST00000628023 PAK2Q13177 524 aa20.08■□□□□ 0.81
CLN3-239ENST00000628023 MKRN4PQ13434 485 aaPredicted RBP20.08■□□□□ 0.81
CLN3-239ENST00000628023 LPIN1Q14693 890 aa20.08■□□□□ 0.81
CLN3-239ENST00000628023 GPNMBQ14956 572 aa20.08■□□□□ 0.81
CLN3-239ENST00000628023 FAM102BQ5T8I3 360 aa20.08■□□□□ 0.81
CLN3-239ENST00000628023 TSHZ1Q6ZSZ6 1077 aa20.08■□□□□ 0.81
CLN3-239ENST00000628023 KCNK18Q7Z418 384 aa20.08■□□□□ 0.81
CLN3-239ENST00000628023 CHAMP1Q96JM3 812 aa20.08■□□□□ 0.81
CLN3-239ENST00000628023 SPATA32Q96LK8 384 aa20.08■□□□□ 0.81
CLN3-239ENST00000628023 XPNPEP1Q9NQW7 623 aa20.08■□□□□ 0.81
CLN3-239ENST00000628023 COL4A3BPQ9Y5P4 624 aa20.08■□□□□ 0.81
CLN3-239ENST00000628023 RFXAPO00287 272 aa20.07■□□□□ 0.8
CLN3-239ENST00000628023 GPR32O75388 356 aa20.07■□□□□ 0.8
CLN3-239ENST00000628023 RPS6KA5O75582 802 aa20.07■□□□□ 0.8
CLN3-239ENST00000628023 CRYBB1P53674 252 aaPredicted RBP20.07■□□□□ 0.8
CLN3-239ENST00000628023 PLEKHG4Q58EX7 1191 aa20.07■□□□□ 0.8
CLN3-239ENST00000628023 USP49Q70CQ1 688 aa20.07■□□□□ 0.8
CLN3-239ENST00000628023 DBF4BQ8NFT6 615 aa20.07■□□□□ 0.8
CLN3-239ENST00000628023 PRPF31Q8WWY3 499 aaKnown RBP20.07■□□□□ 0.8
CLN3-239ENST00000628023 APBB2Q92870 758 aa20.07■□□□□ 0.8
CLN3-239ENST00000628023 RAD9AQ99638 391 aa20.07■□□□□ 0.8
CLN3-239ENST00000628023 SCAND2PQ9GZW5 306 aaPredicted RBP20.07■□□□□ 0.8
CLN3-239ENST00000628023 POLR3FQ9H1D9 316 aaPredicted RBP20.07■□□□□ 0.8
CLN3-239ENST00000628023 MTCH2Q9Y6C9 303 aa20.07■□□□□ 0.8
CLN3-239ENST00000628023 LOXHD1Q8IVV2 1947 aa20.07■□□□□ 0.8
CLN3-239ENST00000628023 PLA2G4BP0C869 781 aa20.06■□□□□ 0.8
CLN3-239ENST00000628023 SRGAP2CP0DJJ0 459 aa20.06■□□□□ 0.8
CLN3-239ENST00000628023 CYP11B2P19099 503 aa20.06■□□□□ 0.8
CLN3-239ENST00000628023 CD52P31358 61 aa20.06■□□□□ 0.8
CLN3-239ENST00000628023 ODR4Q5SWX8 454 aa20.06■□□□□ 0.8
CLN3-239ENST00000628023 ZNF410Q86VK4 478 aa20.06■□□□□ 0.8
CLN3-239ENST00000628023 KSR1Q8IVT5 923 aa20.06■□□□□ 0.8
CLN3-239ENST00000628023 ADAMTS19Q8TE59 1207 aa20.06■□□□□ 0.8
CLN3-239ENST00000628023 LEO1Q8WVC0 666 aaPredicted RBP20.06■□□□□ 0.8
CLN3-239ENST00000628023 GCOM2Q9BZD3 368 aaPredicted RBP20.06■□□□□ 0.8
CLN3-239ENST00000628023 OSBPL7Q9BZF2 842 aa20.06■□□□□ 0.8
CLN3-239ENST00000628023 ADAMTS10Q9H324 1103 aa20.06■□□□□ 0.8
CLN3-239ENST00000628023 CDHR5Q9HBB8 845 aa20.06■□□□□ 0.8
CLN3-239ENST00000628023 RCOR1Q9UKL0 485 aa20.06■□□□□ 0.8
CLN3-239ENST00000628023 SQORQ9Y6N5 450 aa20.06■□□□□ 0.8
CLN3-239ENST00000628023 SIP14410 1827 aa20.06■□□□□ 0.8
CLN3-239ENST00000628023 PRRC2BQ5JSZ5 2229 aaKnown RBP20.05■□□□□ 0.8
CLN3-239ENST00000628023 ASAP2O43150 1006 aa20.05■□□□□ 0.8
CLN3-239ENST00000628023 GJB5O95377 273 aa20.05■□□□□ 0.8
CLN3-239ENST00000628023 DEFB103AP81534 67 aa20.05■□□□□ 0.8
CLN3-239ENST00000628023 LAMTOR4Q0VGL1 99 aa20.05■□□□□ 0.8
CLN3-239ENST00000628023 NFX1Q12986 1120 aaKnown RBP20.05■□□□□ 0.8
CLN3-239ENST00000628023 TFDP1Q14186 410 aa20.05■□□□□ 0.8
CLN3-239ENST00000628023 DHX8Q14562 1220 aaKnown RBP20.05■□□□□ 0.8
CLN3-239ENST00000628023 MXD4Q14582 209 aaPredicted RBP20.05■□□□□ 0.8
CLN3-239ENST00000628023 RRAGBQ5VZM2 374 aa20.05■□□□□ 0.8
CLN3-239ENST00000628023 CCDC73Q6ZRK6 1079 aa20.05■□□□□ 0.8
CLN3-239ENST00000628023 TMEM40Q8WWA1 233 aa20.05■□□□□ 0.8
CLN3-239ENST00000628023 AGO3Q9H9G7 860 aaKnown RBP20.05■□□□□ 0.8
CLN3-239ENST00000628023 GPRC5CQ9NQ84 441 aa20.05■□□□□ 0.8
CLN3-239ENST00000628023 CHMP5Q9NZZ3 219 aa20.05■□□□□ 0.8
CLN3-239ENST00000628023 PCDHA7Q9UN72 937 aa20.05■□□□□ 0.8
CLN3-239ENST00000628023 A0A087WZ62 844 aa20.04■□□□□ 0.8
CLN3-239ENST00000628023 RBAK-RBAKDNI3L0D1 243 aa20.04■□□□□ 0.8
CLN3-239ENST00000628023 AMHP03971 560 aa20.04■□□□□ 0.8
CLN3-239ENST00000628023 EIF4BP23588 611 aaKnown RBP20.04■□□□□ 0.8
CLN3-239ENST00000628023 STAT6P42226 847 aa20.04■□□□□ 0.8
CLN3-239ENST00000628023 SYT2Q8N9I0 419 aaPredicted RBP20.04■□□□□ 0.8
CLN3-239ENST00000628023 RNF149Q8NC42 400 aa20.04■□□□□ 0.8
CLN3-239ENST00000628023 ASAP3Q8TDY4 903 aa20.04■□□□□ 0.8
CLN3-239ENST00000628023 RAD54LQ92698 747 aa20.04■□□□□ 0.8
CLN3-239ENST00000628023 UHRF1Q96T88 793 aaPredicted RBP20.04■□□□□ 0.8
CLN3-239ENST00000628023 FDXACB1Q9BRP7 624 aaPredicted RBP20.04■□□□□ 0.8
CLN3-239ENST00000628023 RUSC1Q9BVN2 902 aa20.04■□□□□ 0.8
CLN3-239ENST00000628023 FAM13BQ9NYF5 915 aa20.04■□□□□ 0.8
CLN3-239ENST00000628023 STK17AQ9UEE5 414 aa20.04■□□□□ 0.8
CLN3-239ENST00000628023 PADI3Q9ULW8 664 aa20.04■□□□□ 0.8
CLN3-239ENST00000628023 COG5Q9UP83 839 aa20.04■□□□□ 0.8
CLN3-239ENST00000628023 NOC2LQ9Y3T9 749 aaKnown RBP20.04■□□□□ 0.8
CLN3-239ENST00000628023 TRANK1O15050 2925 aa20.03■□□□□ 0.8
CLN3-239ENST00000628023 EPOPA6NHQ4 379 aa20.03■□□□□ 0.8
CLN3-239ENST00000628023 GPR182O15218 404 aa20.03■□□□□ 0.8
CLN3-239ENST00000628023 DARSP14868 501 aaKnown RBP20.03■□□□□ 0.8
CLN3-239ENST00000628023 ARL2P36404 184 aa20.03■□□□□ 0.8
CLN3-239ENST00000628023 PHKA2P46019 1235 aa20.03■□□□□ 0.8
CLN3-239ENST00000628023 SLC12A3P55017 1021 aa20.03■□□□□ 0.8
CLN3-239ENST00000628023 AXDND1Q5T1B0 1012 aaPredicted RBP20.03■□□□□ 0.8
CLN3-239ENST00000628023 RINT1Q6NUQ1 792 aa20.03■□□□□ 0.8
CLN3-239ENST00000628023 PDILTQ8N807 584 aa20.03■□□□□ 0.8
CLN3-239ENST00000628023 LARP4BQ92615 738 aaKnown RBP20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms