RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	YWHAB	P31946	246 aa	Known RBP	10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	UBASH3A	P57075	661 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PSMC5	P62195	406 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ARID5B	Q14865	1188 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	NR1I3	Q14994	352 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	HERC4	Q5GLZ8	1057 aa	Predicted RBP	10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	IQSEC1	Q6DN90	963 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CCDC62	Q6P9F0	684 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	FAM126B	Q8IXS8	530 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SLC43A3	Q8NBI5	491 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	LENG1	Q96BZ8	264 aa	Predicted RBP	10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ZNF830	Q96NB3	372 aa	Predicted RBP	10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PCYT2	Q99447	389 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	AP5M1	Q9H0R1	490 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	KCTD10	Q9H3F6	313 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	IL23A	Q9NPF7	189 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	KCND2	Q9NZV8	630 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	LIMA1	Q9UHB6	759 aa	Known RBP	10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	LOC102724159	A0A0B4J2E5	919 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	GSTTP1	A0A1W2PQM5	241 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ARHGEF35	A5YM69	484 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	BACH1	O14867	736 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TEX33	O43247	280 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	DKC1	O60832	514 aa	Known RBP eCLIP	10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TBCA	O75347	108 aa	Known RBP	10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CD4	P01730	458 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	FGB	P02675	491 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TPM3	P06753	285 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	GUCY2C	P25092	1073 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	NPEPPS	P55786	919 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SP4	Q02446	784 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PWP2	Q15269	919 aa	Known RBP	10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	KRT31	Q15323	416 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	LY6K	Q17RY6	165 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TCP11X2	Q5H9J9	407 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	UTP14C	Q5TAP6	766 aa	Known RBP	10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PLA2G4F	Q68DD2	849 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	LRRC55	Q6ZSA7	311 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	C16orf59	Q7L2K0	433 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	FBXO16	Q8IX29	292 aa	Predicted RBP	10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	RPUSD2	Q8IZ73	545 aa	Known RBP	10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ATXN2L	Q8WWM7	1075 aa	Known RBP	10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	HERVK_113	Q902F9	699 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	DCBLD2	Q96PD2	775 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SRRT	Q9BXP5	876 aa	Known RBP	10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	KATNBL1	Q9H079	304 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ZHX3	Q9H4I2	956 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	OLFML3	Q9NRN5	406 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	GABBR1	Q9UBS5	961 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	DDX41	Q9UJV9	622 aa	Known RBP	10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	10.49	□□□□□ -0.73	2e-8	■■■■□ 25.8
PDLIM5-223	ENST00000627587	SI	P14410	1827 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ZMYM2	Q9UBW7	1377 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	MYADML2	A6NDP7	307 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	KIF20A	O95235	890 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PSAP	P07602	524 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SUPT20HL2	P0C7V6	817 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	MYB	P10242	640 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TGFB3	P10600	412 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CSF2RA	P15509	400 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PBX1	P40424	430 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	KCNA1	Q09470	495 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SWSAP1	Q6NVH7	229 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	FOXR2	Q6PJQ5	311 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PADI6	Q6TGC4	694 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ZNF365	Q70YC5	407 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CCDC186	Q7Z3E2	898 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	MYOCD	Q8IZQ8	938 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CCDC43	Q96MW1	224 aa	Known RBP	10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	STRA6	Q9BX79	667 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	THAP9	Q9H5L6	903 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PDGFC	Q9NRA1	345 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ODF2L	Q9ULJ1	636 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	COL4A3BP	Q9Y5P4	624 aa		10.48	□□□□□ -0.73
PDLIM5-223	ENST00000627587	KCNJ18	B7U540	433 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	HIP1R	O75146	1068 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	GAP43	P17677	238 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SPAG1	Q07617	926 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	KCNJ12	Q14500	433 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	NEDD9	Q14511	834 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	BMT2	Q1RMZ1	405 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TAPT1	Q6NXT6	567 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	MIS18BP1	Q6P0N0	1132 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	KCNV1	Q6PIU1	500 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	VSTM4	Q8IW00	320 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ZC3H3	Q8IXZ2	948 aa	Known RBP	10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CSGALNACT2	Q8N6G5	542 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ANKRD20A12P	Q8NF67	263 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	NOC3L	Q8WTT2	800 aa	Known RBP	10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ATP6V0A1	Q93050	837 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CTAGE1	Q96RT6	745 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CEP89	Q96ST8	783 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PBX4	Q9BYU1	374 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	IKZF4	Q9H2S9	585 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	RTN4	Q9NQC3	1192 aa	Known RBP	10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ANKEF1	Q9NU02	776 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	MAFB	Q9Y5Q3	323 aa	Predicted RBP	10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TNFRSF10A	O00220	468 aa		10.47	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PPP1R37	O75864	691 aa		10.47	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms