RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 MYCLP12524 364 aaPredicted RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 ADORA1P30542 326 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 SPOPLQ6IQ16 392 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 YTHDF3Q7Z739 585 aaKnown RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 MS4A14Q96JA4 679 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 UIMC1Q96RL1 719 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 RIOK1Q9BRS2 568 aaKnown RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 HESX1Q9UBX0 185 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 GGT7Q9UJ14 662 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 MAGI3Q5TCQ9 1506 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 PALM3A6NDB9 673 aaPredicted RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 RAD51CO43502 376 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 TTLL1O95922 423 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 ARHGDIAP52565 204 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 XKR9Q5GH70 373 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 RHBDL2Q9NX52 303 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 JAG2Q9Y219 1238 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 MLH3Q9UHC1 1453 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 FRMPD2Q68DX3 1309 aaPredicted RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 KLHL2O95198 593 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 TAC1P20366 129 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 FGFR4P22455 802 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 AARSP49588 968 aaKnown RBP eCLIP9.49□□□□□ -0.896e-7■■■■■ 85.6
VCL-206ENST00000623461 GABPAQ06546 454 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 KYNUQ16719 465 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 PAPD7Q5XG87 772 aaKnown RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 FBXL13Q8NEE6 735 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 FAF2Q96CS3 445 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 TSSK1BQ9BXA7 367 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 ASAP2O43150 1006 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 UBTFL6P0CB48 400 aaPredicted RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 MAP4P27816 1152 aaKnown RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 KIF2BQ8N4N8 673 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 USP38Q8NB14 1042 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 PBXIP1Q96AQ6 731 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 SERPINB12Q96P63 405 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 WDR11Q9BZH6 1224 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 GGA2Q9UJY4 613 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 KCNQ3O43525 872 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 ADCY3O60266 1144 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 SERPINB2P05120 415 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 PAX7P23759 505 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 ATICP31939 592 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 HSD17B3P37058 310 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 TAF1BQ53T94 588 aaPredicted RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 TRIM59Q8IWR1 403 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 TERB1Q8NA31 727 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 BTBD6Q96KE9 485 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 ERVV-2B6SEH9 535 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 GYPCP04921 128 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 CASP2P42575 452 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 IFRD2Q12894 506 aaPredicted RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 KLC3Q6P597 504 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 ENGASEQ8NFI3 743 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 BRIP1Q9BX63 1249 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 ASCC2Q9H1I8 757 aaPredicted RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 ANKZF1Q9H8Y5 726 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 ANAPC7Q9UJX3 599 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 S100BP04271 92 aaPredicted RBP9.48□□□□□ -0.89
VCL-206ENST00000623461 ATP2C1P98194 919 aaPredicted RBP9.48□□□□□ -0.89
VCL-206ENST00000623461 DPYDQ12882 1025 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 EFTUD2Q15029 972 aaKnown RBP eCLIP9.48□□□□□ -0.892e-6■■■□□ 18.1
VCL-206ENST00000623461 DDHD1Q8NEL9 900 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 RAD54LQ92698 747 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 FAM192AQ9GZU8 254 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 DDX28Q9NUL7 540 aaKnown RBP9.48□□□□□ -0.89
VCL-206ENST00000623461 RGL1Q9NZL6 768 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 CNOT8Q9UFF9 292 aaKnown RBP9.48□□□□□ -0.89
VCL-206ENST00000623461 C15orf41Q9Y2V0 281 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 L3MBTL1Q9Y468 752 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 C16orf96A6NNT2 1141 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 GOLGA8HP0CJ92 632 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 IL10P22301 178 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 IZUMO3Q5VZ72 239 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 ZNF564Q8TBZ8 553 aaPredicted RBP9.48□□□□□ -0.89
VCL-206ENST00000623461 OPTNQ96CV9 577 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 MRGBPQ9NV56 204 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 WDR70Q9NW82 654 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 TTLL3Q9Y4R7 772 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 IGSF1Q8N6C5 1336 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 E9PMD0 336 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 ENO1P06733 434 aaKnown RBP9.48□□□□□ -0.89
VCL-206ENST00000623461 KITP10721 976 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 GFAPP14136 432 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 KRT17Q04695 432 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 NAB2Q15742 525 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 ZBTB8OSQ8IWT0 167 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 ATL2Q8NHH9 583 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 MTBPQ96DY7 904 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 CYP26B1Q9NR63 512 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 PDHBP11177 359 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 PHKA1P46020 1223 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 DYNLT1P63172 113 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 B4GALNT2Q8NHY0 566 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 ATP10AO60312 1499 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 TMEM120BA0PK00 339 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 SRRM3A6NNA2 597 aaPredicted RBP9.48□□□□□ -0.89
VCL-206ENST00000623461 KIF28PB7ZC32 967 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 H0Y626 953 aa9.48□□□□□ -0.89
VCL-206ENST00000623461 TRIM16O95361 564 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms