RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 TBX20Q9UMR3 447 aa17.86■□□□□ 0.45
LDB3-208ENST00000623007 CLEC11AQ9Y240 323 aa17.86■□□□□ 0.45
LDB3-208ENST00000623007 MYH9P35579 1960 aaKnown RBP17.85■□□□□ 0.45
LDB3-208ENST00000623007 SYNGAP1Q96PV0 1343 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 DNAJC25-GNG10A0A024R161 153 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 SOWAHBA6NEL2 793 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 EFCAB8A8MWE9 144 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 STBD1O95210 358 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 UCHL3P15374 230 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 PON1P27169 355 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 ARHGAP25P42331 645 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 NPTX2P47972 431 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 FMO5P49326 533 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 ASIC2Q16515 512 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 GPAT2Q6NUI2 795 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 SEPT14Q6ZU15 432 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 CCDC60Q8IWA6 550 aaPredicted RBP17.85■□□□□ 0.45
LDB3-208ENST00000623007 SLC7A3Q8WY07 619 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 JPH2Q9BR39 696 aaPredicted RBP17.85■□□□□ 0.45
LDB3-208ENST00000623007 AZI2Q9H6S1 392 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 GCNT4Q9P109 453 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 ARHGAP20Q9P2F6 1191 aa17.85■□□□□ 0.45
LDB3-208ENST00000623007 CCDC169A6NNP5 214 aa17.84■□□□□ 0.45
LDB3-208ENST00000623007 STRNO43815 780 aa17.84■□□□□ 0.45
LDB3-208ENST00000623007 ZNF862O60290 1169 aa17.84■□□□□ 0.45
LDB3-208ENST00000623007 FARP2O94887 1054 aaPredicted RBP17.84■□□□□ 0.45
LDB3-208ENST00000623007 GARTP22102 1010 aa17.84■□□□□ 0.45
LDB3-208ENST00000623007 UBA1P22314 1058 aaKnown RBP17.84■□□□□ 0.45
LDB3-208ENST00000623007 CASP4P49662 377 aa17.84■□□□□ 0.45
LDB3-208ENST00000623007 POLGP54098 1239 aaPredicted RBP17.84■□□□□ 0.45
LDB3-208ENST00000623007 ERVK-9P63128 1117 aa17.84■□□□□ 0.45
LDB3-208ENST00000623007 TDRD12Q587J7 1177 aaKnown RBP17.84■□□□□ 0.45
LDB3-208ENST00000623007 CYFIP1Q7L576 1253 aa17.84■□□□□ 0.45
LDB3-208ENST00000623007 RNF10Q8N5U6 811 aaKnown RBP17.84■□□□□ 0.45
LDB3-208ENST00000623007 TMEM161BQ8NDZ6 487 aa17.84■□□□□ 0.45
LDB3-208ENST00000623007 GPRC5AQ8NFJ5 357 aa17.84■□□□□ 0.45
LDB3-208ENST00000623007 TRIM58Q8NG06 486 aa17.84■□□□□ 0.45
LDB3-208ENST00000623007 FAM81BQ96LP2 452 aa17.84■□□□□ 0.45
LDB3-208ENST00000623007 WDR24Q96S15 920 aa17.84■□□□□ 0.45
LDB3-208ENST00000623007 MRFAP1Q9Y605 127 aa17.84■□□□□ 0.45
LDB3-208ENST00000623007 EPHB6O15197 1021 aa17.83■□□□□ 0.45
LDB3-208ENST00000623007 NKRFO15226 690 aaKnown RBP eCLIP17.83■□□□□ 0.45
LDB3-208ENST00000623007 PJA2O43164 708 aa17.83■□□□□ 0.45
LDB3-208ENST00000623007 ZBTB48P10074 688 aaPredicted RBP17.83■□□□□ 0.45
LDB3-208ENST00000623007 FERP16591 822 aa17.83■□□□□ 0.45
LDB3-208ENST00000623007 EIF4A3P38919 411 aaKnown RBP17.83■□□□□ 0.45
LDB3-208ENST00000623007 PRKCIP41743 596 aa17.83■□□□□ 0.45
LDB3-208ENST00000623007 CYP2J2P51589 502 aa17.83■□□□□ 0.45
LDB3-208ENST00000623007 NPEPPSP55786 919 aa17.83■□□□□ 0.45
LDB3-208ENST00000623007 PLA2G4FQ68DD2 849 aa17.83■□□□□ 0.45
LDB3-208ENST00000623007 MAEAQ7L5Y9 396 aa17.83■□□□□ 0.45
LDB3-208ENST00000623007 ANKRD23Q86SG2 305 aa17.83■□□□□ 0.45
LDB3-208ENST00000623007 ALS2CR12Q96Q35 445 aa17.83■□□□□ 0.45
LDB3-208ENST00000623007 MLXIPQ9HAP2 919 aa17.83■□□□□ 0.45
LDB3-208ENST00000623007 CDC23Q9UJX2 597 aa17.83■□□□□ 0.45
LDB3-208ENST00000623007 REXO2Q9Y3B8 237 aaKnown RBP17.83■□□□□ 0.45
LDB3-208ENST00000623007 PCDHA13Q9Y5I0 950 aa17.83■□□□□ 0.45
LDB3-208ENST00000623007 LRRC37A2A6NM11 1700 aa17.83■□□□□ 0.44
LDB3-208ENST00000623007 SLC16A4O15374 487 aa17.83■□□□□ 0.44
LDB3-208ENST00000623007 GTF2H1P32780 548 aa17.83■□□□□ 0.44
LDB3-208ENST00000623007 NAMPTP43490 491 aa17.83■□□□□ 0.44
LDB3-208ENST00000623007 VAMP7P51809 220 aa17.83■□□□□ 0.44
LDB3-208ENST00000623007 KLHL30Q0D2K2 578 aa17.83■□□□□ 0.44
LDB3-208ENST00000623007 RAPGEF1Q13905 1077 aa17.83■□□□□ 0.44
LDB3-208ENST00000623007 SLC18A3Q16572 532 aa17.83■□□□□ 0.44
LDB3-208ENST00000623007 WHAMMP3Q1A5X7 153 aa17.83■□□□□ 0.44
LDB3-208ENST00000623007 ASTE1Q2TB18 679 aaPredicted RBP17.83■□□□□ 0.44
LDB3-208ENST00000623007 CRACR2AQ9BSW2 395 aa17.83■□□□□ 0.44
LDB3-208ENST00000623007 DHX33Q9H6R0 707 aaKnown RBP17.83■□□□□ 0.44
LDB3-208ENST00000623007 NLRC4Q9NPP4 1024 aa17.83■□□□□ 0.44
LDB3-208ENST00000623007 HSPBP1Q9NZL4 362 aa17.83■□□□□ 0.44
LDB3-208ENST00000623007 ZNF215Q9UL58 517 aaPredicted RBP17.83■□□□□ 0.44
LDB3-208ENST00000623007 GUCA1BQ9UMX6 200 aa17.83■□□□□ 0.44
LDB3-208ENST00000623007 USP20Q9Y2K6 914 aa17.83■□□□□ 0.44
LDB3-208ENST00000623007 DENND3A2RUS2 1198 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 TACC1O75410 805 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 STAT1P42224 750 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 MAGEA1P43355 309 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 STAT5BP51692 787 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 MYL7Q01449 175 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 STRN3Q13033 797 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 EMC2Q15006 297 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 SMYD5Q6GMV2 418 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 SLFN12LQ6IEE8 588 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 PLPPR4Q7Z2D5 763 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 ZNF467Q7Z7K2 595 aaPredicted RBP17.82■□□□□ 0.44
LDB3-208ENST00000623007 PDCL2Q8N4E4 241 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 C2orf69Q8N8R5 385 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 TMC2Q8TDI7 906 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 TCP11Q8WWU5 503 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 BBXQ8WY36 941 aaPredicted RBP17.82■□□□□ 0.44
LDB3-208ENST00000623007 ANKRD7Q92527 254 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 UBXN4Q92575 508 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 SECISBP2LQ93073 1101 aaKnown RBP17.82■□□□□ 0.44
LDB3-208ENST00000623007 STK33Q9BYT3 514 aa17.82■□□□□ 0.44
LDB3-208ENST00000623007 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.82■□□□□ 0.44
LDB3-208ENST00000623007 CNGA1P29973 690 aa17.81■□□□□ 0.44
LDB3-208ENST00000623007 SP2Q02086 613 aa17.81■□□□□ 0.44
LDB3-208ENST00000623007 TTLL4Q14679 1199 aa17.81■□□□□ 0.44
LDB3-208ENST00000623007 HGSNATQ68CP4 663 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms