RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 ACTRT1Q8TDG2 376 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 SLC5A5Q92911 643 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 CBWD1Q9BRT8 395 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 TMEM59LQ9UK28 342 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 FBXL5Q9UKA1 691 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 CCPG1Q9ULG6 757 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 EMSYQ7Z589 1322 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 SLC26A4O43511 780 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 KRT13P13646 458 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 PPP2R5CQ13362 524 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 STXBP4Q6ZWJ1 553 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 SYCE1Q8N0S2 351 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 OGFOD1Q8N543 542 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 GLG1Q92896 1179 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 FIZ1Q96SL8 496 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 TSPYL1Q9H0U9 437 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 GPRC5CQ9NQ84 441 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 CTTNBP2NLQ9P2B4 639 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 APEX2Q9UBZ4 518 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 TMX2Q9Y320 296 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 MRPL11Q9Y3B7 192 aaKnown RBP14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 FAM169AQ9Y6X4 670 aa14.02□□□□□ -0.16
CCDC88A-214ENST00000621814 EIF3DO15371 548 aaKnown RBP eCLIP14.02□□□□□ -0.17
CCDC88A-214ENST00000621814 ATMINO43313 823 aaPredicted RBP14.02□□□□□ -0.17
CCDC88A-214ENST00000621814 MYZAPP0CAP1 466 aa14.02□□□□□ -0.17
CCDC88A-214ENST00000621814 ITGB5P18084 799 aa14.02□□□□□ -0.17
CCDC88A-214ENST00000621814 LMNB1P20700 586 aa14.02□□□□□ -0.17
CCDC88A-214ENST00000621814 CHURC1Q8WUH1 139 aa14.02□□□□□ -0.17
CCDC88A-214ENST00000621814 KAT5Q92993 513 aa14.02□□□□□ -0.17
CCDC88A-214ENST00000621814 CCDC127Q96BQ5 260 aa14.02□□□□□ -0.17
CCDC88A-214ENST00000621814 MRIQ9BWK5 157 aa14.02□□□□□ -0.17
CCDC88A-214ENST00000621814 ATP8A1Q9Y2Q0 1164 aa14.02□□□□□ -0.17
CCDC88A-214ENST00000621814 SMIM23A6NLE4 172 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 NFIBO00712 420 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 SORBS3O60504 671 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 DHX9Q08211 1270 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 BFSP1Q12934 665 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 IL31RAQ8NI17 732 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 ATP6V1G3Q96LB4 118 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 UTP11Q9Y3A2 253 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 BTNL10A8MVZ5 291 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 VIL1P09327 827 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 MYCLP12524 364 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 ALAS1P13196 640 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 ECHS1P30084 290 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 CORO7P57737 925 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 PDE4CQ08493 712 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 CCDC26Q8TAB7 109 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 UHMK1Q8TAS1 419 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 AKT1S1Q96B36 256 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 ZNF277Q9NRM2 450 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 KCNH7Q9NS40 1196 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 ZNF70Q9UC06 446 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 TMOD1P28289 359 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 LSP1P33241 339 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 ARHGEF19Q8IW93 802 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 KIFC3Q9BVG8 833 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 GPR88Q9GZN0 384 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 SUCLA2Q9P2R7 463 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 TCEAL9Q9UHQ7 104 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 COG5Q9UP83 839 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 LTBP1Q14766 1721 aa14.01□□□□□ -0.17
CCDC88A-214ENST00000621814 E7EVH7 732 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 FTLP02792 175 aaPredicted RBP14□□□□□ -0.17
CCDC88A-214ENST00000621814 EIF2AK2P19525 551 aaKnown RBP14□□□□□ -0.17
CCDC88A-214ENST00000621814 MAGEA9P43362 315 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 PPP3CAQ08209 521 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 MESDQ14696 234 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 UAP1Q16222 522 aaPredicted RBP14□□□□□ -0.17
CCDC88A-214ENST00000621814 DAW1Q8N136 415 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 RFFLQ8WZ73 363 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 EHMT1Q9H9B1 1298 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 COL20A1Q9P218 1284 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 HERC5Q9UII4 1024 aaKnown RBP14□□□□□ -0.17
CCDC88A-214ENST00000621814 GTPBP10A4D1E9 387 aaKnown RBP14□□□□□ -0.17
CCDC88A-214ENST00000621814 SPDYE2BA6NHP3 402 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 SLC16A4O15374 487 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 CLSTN1O94985 981 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 SPDYE6P0CI01 402 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 INPP5BP32019 993 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 SP4Q02446 784 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 IFFO1Q0D2I5 559 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 DCAF12L1Q5VU92 463 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 PACS2Q86VP3 889 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 PPM1KQ8N3J5 372 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 LARGE2Q8N3Y3 721 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 SLC30A5Q8TAD4 765 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 HES6Q96HZ4 224 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 BTBD6Q96KE9 485 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 POP1Q99575 1024 aaKnown RBP14□□□□□ -0.17
CCDC88A-214ENST00000621814 LRRC4CQ9HCJ2 640 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 ERVK-5Q9HDB9 667 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 FRMPD4Q14CM0 1322 aa14□□□□□ -0.17
CCDC88A-214ENST00000621814 SCN9AQ15858 1988 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 CCDC169A6NNP5 214 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 PEX3P56589 373 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 CUL1Q13616 776 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 RPUSD2Q8IZ73 545 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 FAM84AQ96KN4 292 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 ZNF341Q9BYN7 854 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms