RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 POLGP54098 1239 aaPredicted RBP21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 CALCRLQ16602 461 aa21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 PLA2G4FQ68DD2 849 aa21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 NCAPH2Q6IBW4 605 aa21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 THNSL1Q8IYQ7 743 aa21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 LRRC43Q8N309 656 aa21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 TCP11Q8WWU5 503 aa21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 ZSCAN31Q96LW9 406 aaPredicted RBP21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 SH2D3AQ9BRG2 576 aa21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 CWH43Q9H720 699 aa21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 PRKAG3Q9UGI9 489 aa21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 PUF60Q9UHX1 559 aaKnown RBP21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 CARNS1A5YM72 827 aa21.32■■□□□ 1
CCDC28A-203ENST00000617445 FAM205CA6NFA0 338 aa21.32■■□□□ 1
CCDC28A-203ENST00000617445 FGF18O76093 207 aa21.32■■□□□ 1
CCDC28A-203ENST00000617445 PPM1AP35813 382 aa21.32■■□□□ 1
CCDC28A-203ENST00000617445 LTBRP36941 435 aa21.32■■□□□ 1
CCDC28A-203ENST00000617445 NPEPPSP55786 919 aa21.32■■□□□ 1
CCDC28A-203ENST00000617445 PLCB3Q01970 1234 aa21.32■■□□□ 1
CCDC28A-203ENST00000617445 ADAM15Q13444 863 aa21.32■■□□□ 1
CCDC28A-203ENST00000617445 ZNF598Q86UK7 904 aaKnown RBP21.32■■□□□ 1
CCDC28A-203ENST00000617445 PSPC1Q8WXF1 523 aaKnown RBP21.32■■□□□ 1
CCDC28A-203ENST00000617445 MRPL9Q9BYD2 267 aaKnown RBP21.32■■□□□ 1
CCDC28A-203ENST00000617445 TLR9Q9NR96 1032 aa21.32■■□□□ 1
CCDC28A-203ENST00000617445 RNF19AQ9NV58 838 aa21.32■■□□□ 1
CCDC28A-203ENST00000617445 RGL1Q9NZL6 768 aa21.32■■□□□ 1
CCDC28A-203ENST00000617445 COL4A3BPQ9Y5P4 624 aa21.32■■□□□ 1
CCDC28A-203ENST00000617445 PLXNA4Q9HCM2 1894 aa21.32■■□□□ 1
CCDC28A-203ENST00000617445 NEMFO60524 1076 aa21.31■■□□□ 1
CCDC28A-203ENST00000617445 LYPLA2O95372 231 aa21.31■■□□□ 1
CCDC28A-203ENST00000617445 FGFR4P22455 802 aa21.31■■□□□ 1
CCDC28A-203ENST00000617445 SRGAP1Q7Z6B7 1085 aa21.31■■□□□ 1
CCDC28A-203ENST00000617445 EFHBQ8N7U6 833 aa21.31■■□□□ 1
CCDC28A-203ENST00000617445 DYDC2Q96IM9 177 aa21.31■■□□□ 1
CCDC28A-203ENST00000617445 HSD17B14Q9BPX1 270 aa21.31■■□□□ 1
CCDC28A-203ENST00000617445 IGFLR1Q9H665 355 aa21.31■■□□□ 1
CCDC28A-203ENST00000617445 TTC12Q9H892 705 aaPredicted RBP21.31■■□□□ 1
CCDC28A-203ENST00000617445 SH2B1Q9NRF2 756 aaPredicted RBP21.31■■□□□ 1
CCDC28A-203ENST00000617445 WRAP73Q9P2S5 460 aaPredicted RBP21.31■■□□□ 1
CCDC28A-203ENST00000617445 CSDE1O75534 798 aaKnown RBP21.3■■□□□ 1
CCDC28A-203ENST00000617445 SLITRK3O94933 977 aa21.3■■□□□ 1
CCDC28A-203ENST00000617445 IL9P15248 144 aa21.3■■□□□ 1
CCDC28A-203ENST00000617445 PHKA2P46019 1235 aa21.3■■□□□ 1
CCDC28A-203ENST00000617445 RAB27AP51159 221 aa21.3■■□□□ 1
CCDC28A-203ENST00000617445 HMGN5P82970 282 aaKnown RBP21.3■■□□□ 1
CCDC28A-203ENST00000617445 KRT17Q04695 432 aa21.3■■□□□ 1
CCDC28A-203ENST00000617445 XKR9Q5GH70 373 aa21.3■■□□□ 1
CCDC28A-203ENST00000617445 TWF2Q6IBS0 349 aaKnown RBP21.3■■□□□ 1
CCDC28A-203ENST00000617445 CATSPER4Q7RTX7 472 aa21.3■■□□□ 1
CCDC28A-203ENST00000617445 TPH2Q8IWU9 490 aa21.3■■□□□ 1
CCDC28A-203ENST00000617445 GJD3Q8N144 294 aa21.3■■□□□ 1
CCDC28A-203ENST00000617445 MICAL1Q8TDZ2 1067 aa21.3■■□□□ 1
CCDC28A-203ENST00000617445 NLRP4Q96MN2 994 aa21.3■■□□□ 1
CCDC28A-203ENST00000617445 ZNF558Q96NG5 402 aa21.3■■□□□ 1
CCDC28A-203ENST00000617445 CDCA3Q99618 268 aaPredicted RBP21.3■■□□□ 1
CCDC28A-203ENST00000617445 EIF2AK1Q9BQI3 630 aaKnown RBP21.3■■□□□ 1
CCDC28A-203ENST00000617445 IFT122Q9HBG6 1241 aa21.3■■□□□ 1
CCDC28A-203ENST00000617445 ZNF623O75123 536 aa21.29■■□□□ 1
CCDC28A-203ENST00000617445 IRS1P35568 1242 aa21.29■■□□□ 1
CCDC28A-203ENST00000617445 ST3GAL1Q11201 340 aa21.29■■□□□ 1
CCDC28A-203ENST00000617445 ORC2Q13416 577 aaPredicted RBP21.29■■□□□ 1
CCDC28A-203ENST00000617445 CTTNQ14247 550 aaKnown RBP21.29■■□□□ 1
CCDC28A-203ENST00000617445 PCBP1Q15365 356 aaKnown RBP eCLIP21.29■■□□□ 1
CCDC28A-203ENST00000617445 CLLU1OSQ5K130 101 aa21.29■■□□□ 1
CCDC28A-203ENST00000617445 KCNT2Q6UVM3 1135 aa21.29■■□□□ 1
CCDC28A-203ENST00000617445 LRRC55Q6ZSA7 311 aa21.29■■□□□ 1
CCDC28A-203ENST00000617445 KSR1Q8IVT5 923 aa21.29■■□□□ 1
CCDC28A-203ENST00000617445 ZNF579Q8NAF0 562 aaKnown RBP21.29■■□□□ 1
CCDC28A-203ENST00000617445 RNF169Q8NCN4 708 aa21.29■■□□□ 1
CCDC28A-203ENST00000617445 PRPF31Q8WWY3 499 aaKnown RBP21.29■■□□□ 1
CCDC28A-203ENST00000617445 MRPS27Q92552 414 aaKnown RBP21.29■■□□□ 1
CCDC28A-203ENST00000617445 MTMR9Q96QG7 549 aa21.29■■□□□ 1
CCDC28A-203ENST00000617445 ANKEF1Q9NU02 776 aa21.29■■□□□ 1
CCDC28A-203ENST00000617445 PIN4Q9Y237 131 aaKnown RBP21.29■■□□□ 1
CCDC28A-203ENST00000617445 XRCC6P12956 609 aaKnown RBP eCLIP21.28■■□□□ 1
CCDC28A-203ENST00000617445 ATF7P17544 494 aaPredicted RBP21.28■■□□□ 1
CCDC28A-203ENST00000617445 TXKP42681 527 aa21.28■■□□□ 1
CCDC28A-203ENST00000617445 NDUFV1P49821 464 aa21.28■■□□□ 1
CCDC28A-203ENST00000617445 CYP4A11Q02928 519 aa21.28■■□□□ 1
CCDC28A-203ENST00000617445 LAMTOR4Q0VGL1 99 aa21.28■■□□□ 1
CCDC28A-203ENST00000617445 SMAD4Q13485 552 aaKnown RBP21.28■■□□□ 1
CCDC28A-203ENST00000617445 MXD4Q14582 209 aaPredicted RBP21.28■■□□□ 1
CCDC28A-203ENST00000617445 EMC2Q15006 297 aa21.28■■□□□ 1
CCDC28A-203ENST00000617445 CCDC83Q8IWF9 413 aa21.28■■□□□ 1
CCDC28A-203ENST00000617445 TMEM143Q96AN5 459 aa21.28■■□□□ 1
CCDC28A-203ENST00000617445 C8orf76Q96K31 380 aa21.28■■□□□ 1
CCDC28A-203ENST00000617445 MTRQ99707 1265 aa21.28■■□□□ 1
CCDC28A-203ENST00000617445 FOXP1Q9H334 677 aaPredicted RBP21.28■■□□□ 1
CCDC28A-203ENST00000617445 TLE6Q9H808 572 aa21.28■■□□□ 1
CCDC28A-203ENST00000617445 NGRNQ9NPE2 291 aaKnown RBP21.28■■□□□ 1
CCDC28A-203ENST00000617445 SPG21Q9NZD8 308 aa21.28■■□□□ 1
CCDC28A-203ENST00000617445 CD207Q9UJ71 328 aa21.28■■□□□ 1
CCDC28A-203ENST00000617445 FSCN2O14926 492 aa21.27■■□□□ 1
CCDC28A-203ENST00000617445 CSPG5O95196 566 aa21.27■■□□□ 1
CCDC28A-203ENST00000617445 GTF2F1P35269 517 aaKnown RBP eCLIP21.27■■□□□ 1
CCDC28A-203ENST00000617445 NRIP1P48552 1158 aa21.27■■□□□ 1
CCDC28A-203ENST00000617445 POU5F1BQ06416 359 aa21.27■■□□□ 1
CCDC28A-203ENST00000617445 DLX2Q07687 328 aaPredicted RBP21.27■■□□□ 1
CCDC28A-203ENST00000617445 SMAD2Q15796 467 aaKnown RBP21.27■■□□□ 1
CCDC28A-203ENST00000617445 ADGRD2Q7Z7M1 963 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms