RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 RPS6KA5O75582 802 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 DGAT1O75907 488 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 DARSP14868 501 aaKnown RBP14.99□□□□□ -0.01
LINC00540-202ENST00000616974 EIF4BP23588 611 aaKnown RBP14.99□□□□□ -0.01
LINC00540-202ENST00000616974 TMOD1P28289 359 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 LONP1P36776 959 aaKnown RBP14.99□□□□□ -0.01
LINC00540-202ENST00000616974 UBA7P41226 1012 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 CRYBB1P53674 252 aaPredicted RBP14.99□□□□□ -0.01
LINC00540-202ENST00000616974 SLC12A3P55017 1021 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 MAPK7Q13164 816 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 LONRF3Q496Y0 759 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 RINT1Q6NUQ1 792 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 KRI1Q8N9T8 703 aaKnown RBP14.99□□□□□ -0.01
LINC00540-202ENST00000616974 STAMQ92783 540 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 M0QZ92 97 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 EYA4O95677 639 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 ATP2A2P16615 1042 aaKnown RBP14.99□□□□□ -0.01
LINC00540-202ENST00000616974 RFC5P40937 340 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 PAK2Q13177 524 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 C1orf186Q6ZWK4 172 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 CCDC43Q96MW1 224 aaKnown RBP14.99□□□□□ -0.01
LINC00540-202ENST00000616974 TTYH1Q9H313 450 aaPredicted RBP14.99□□□□□ -0.01
LINC00540-202ENST00000616974 HCSTQ9UBK5 93 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 MEIS3P2A8K0S8 358 aa14.98□□□□□ -0.01
LINC00540-202ENST00000616974 ENPP3O14638 875 aa14.98□□□□□ -0.01
LINC00540-202ENST00000616974 B4GALT5O43286 388 aa14.98□□□□□ -0.01
LINC00540-202ENST00000616974 BMP15O95972 392 aa14.98□□□□□ -0.01
LINC00540-202ENST00000616974 PLA2G4BP0C869 781 aa14.98□□□□□ -0.01
LINC00540-202ENST00000616974 IKBKEQ14164 716 aa14.98□□□□□ -0.01
LINC00540-202ENST00000616974 LEO1Q8WVC0 666 aaPredicted RBP14.98□□□□□ -0.01
LINC00540-202ENST00000616974 PSPC1Q8WXF1 523 aaKnown RBP14.98□□□□□ -0.01
LINC00540-202ENST00000616974 SEPT8Q92599 483 aa14.98□□□□□ -0.01
LINC00540-202ENST00000616974 ZNF396Q96N95 335 aaPredicted RBP14.98□□□□□ -0.01
LINC00540-202ENST00000616974 DNM3Q9UQ16 869 aa14.98□□□□□ -0.01
LINC00540-202ENST00000616974 TRIOO75962 3097 aa14.98□□□□□ -0.01
LINC00540-202ENST00000616974 ATG2AQ2TAZ0 1938 aa14.98□□□□□ -0.01
LINC00540-202ENST00000616974 PFKMP08237 780 aa14.98□□□□□ -0.01
LINC00540-202ENST00000616974 CYP11B2P19099 503 aa14.98□□□□□ -0.01
LINC00540-202ENST00000616974 CASP1P29466 404 aa14.98□□□□□ -0.01
LINC00540-202ENST00000616974 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.97□□□□□ -0.01
LINC00540-202ENST00000616974 A0A1W2PPC1 479 aa14.97□□□□□ -0.01
LINC00540-202ENST00000616974 HIP1RO75146 1068 aa14.97□□□□□ -0.01
LINC00540-202ENST00000616974 YEATS4O95619 227 aa14.97□□□□□ -0.01
LINC00540-202ENST00000616974 XRCC6P12956 609 aaKnown RBP eCLIP14.97□□□□□ -0.01
LINC00540-202ENST00000616974 DNAJB2P25686 324 aa14.97□□□□□ -0.01
LINC00540-202ENST00000616974 CRIPAKQ8N1N5 446 aa14.97□□□□□ -0.01
LINC00540-202ENST00000616974 CPB2Q96IY4 423 aa14.97□□□□□ -0.01
LINC00540-202ENST00000616974 AK8Q96MA6 479 aa14.97□□□□□ -0.01
LINC00540-202ENST00000616974 ADAM2Q99965 735 aa14.97□□□□□ -0.01
LINC00540-202ENST00000616974 CERS4Q9HA82 394 aa14.97□□□□□ -0.01
LINC00540-202ENST00000616974 RCOR1Q9UKL0 485 aa14.97□□□□□ -0.01
LINC00540-202ENST00000616974 ME1P48163 572 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 DNM2P50570 870 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 AMHR2Q16671 573 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 HERC6Q8IVU3 1022 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 RASSF8Q8NHQ8 419 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 CDK5RAP3Q96JB5 506 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 CCSER1Q9C0I3 900 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 NKX2-4Q9H2Z4 354 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 LRRIQ4A6NIV6 560 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 PPP6R2O75170 966 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 CA3P07451 260 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 HOXA11P31270 313 aaPredicted RBP14.96□□□□□ -0.01
LINC00540-202ENST00000616974 MBTD1Q05BQ5 628 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 DSC3Q14574 896 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 SYT2Q8N9I0 419 aaPredicted RBP14.96□□□□□ -0.01
LINC00540-202ENST00000616974 RAD54LQ92698 747 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 RNF19AQ9NV58 838 aa14.96□□□□□ -0.01
LINC00540-202ENST00000616974 ABHD14A-ACY1A0A1B0GW23 586 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 ACTN1P12814 892 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 LIG1P18858 919 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 ANP32AP39687 249 aaKnown RBP14.95□□□□□ -0.02
LINC00540-202ENST00000616974 E2F4Q16254 413 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 TAS1R3Q7RTX0 852 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 GPBP1Q86WP2 473 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 GRAMD1CQ8IYS0 662 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 REEP2Q9BRK0 252 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 IKZF4Q9H2S9 585 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.95□□□□□ -0.02
LINC00540-202ENST00000616974 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.95□□□□□ -0.02
LINC00540-202ENST00000616974 EPOPA6NHQ4 379 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 BAIAP3O94812 1187 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 GJB5O95377 273 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 PARNO95453 639 aaKnown RBP14.95□□□□□ -0.02
LINC00540-202ENST00000616974 ATF7P17544 494 aaPredicted RBP14.95□□□□□ -0.02
LINC00540-202ENST00000616974 MUTP22033 750 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 KCNJ6P48051 423 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 AFF1P51825 1210 aaKnown RBP14.95□□□□□ -0.02
LINC00540-202ENST00000616974 PTENP60484 403 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 DYMQ7RTS9 669 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 LARP4BQ92615 738 aaKnown RBP14.95□□□□□ -0.02
LINC00540-202ENST00000616974 LPPQ93052 612 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 TOP1MTQ969P6 601 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 CALML4Q96GE6 196 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 SPATA32Q96LK8 384 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 GCOM2Q9BZD3 368 aaPredicted RBP14.95□□□□□ -0.02
LINC00540-202ENST00000616974 TSPYL2Q9H2G4 693 aaPredicted RBP14.95□□□□□ -0.02
LINC00540-202ENST00000616974 MTUS1Q9ULD2 1270 aa14.95□□□□□ -0.02
LINC00540-202ENST00000616974 A0A1B0GVL5 298 aa14.94□□□□□ -0.02
LINC00540-202ENST00000616974 INO80B-WBP1J3KQ70 363 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms