RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 KIAA0319LQ8IZA0 1049 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 FBXL6Q8N531 539 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 LEO1Q8WVC0 666 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-214ENST00000600840 ATOH1Q92858 354 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-214ENST00000600840 POP1Q99575 1024 aaKnown RBP9.8□□□□□ -0.84
TRIM28-214ENST00000600840 CELF4Q9BZC1 486 aaKnown RBP9.8□□□□□ -0.84
TRIM28-214ENST00000600840 TLR9Q9NR96 1032 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 CFAP45Q9UL16 551 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 PADI3Q9ULW8 664 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 PCDHA12Q9UN75 941 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 IGSF9BQ9UPX0 1349 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 FNDC1Q4ZHG4 1894 aaPredicted RBP9.79□□□□□ -0.84
TRIM28-214ENST00000600840 PLXNA4Q9HCM2 1894 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 SMIM35A0A1B0GVV1 85 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 BACH1O14867 736 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 SPTLC2O15270 562 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 HBP1O60381 514 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 SLITRK3O94933 977 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 BAG4O95429 457 aaKnown RBP9.79□□□□□ -0.84
TRIM28-214ENST00000600840 SPATA31C1P0DKV0 1188 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 DNAJB1P25685 340 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 MARCKSP29966 332 aaPredicted RBP9.79□□□□□ -0.84
TRIM28-214ENST00000600840 CTNNB1P35222 781 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 BMPR1AP36894 532 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 TECP42680 631 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 ZXDAP98168 799 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 KRT76Q01546 638 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 SMAD4Q13485 552 aaKnown RBP9.79□□□□□ -0.84
TRIM28-214ENST00000600840 EPHA7Q15375 998 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 ECM1Q16610 540 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 LRCH2Q5VUJ6 765 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 IER5Q5VY09 327 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 PDXDC2PQ6P474 469 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 FIBCD1Q8N539 461 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 ATP8B4Q8TF62 1192 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 LRRC15Q8TF66 581 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 CLIC6Q96NY7 704 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 PRRX2Q99811 253 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 TEKT3Q9BXF9 490 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 IGFLR1Q9H665 355 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 ZNF302Q9NR11 478 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 WRAP73Q9P2S5 460 aaPredicted RBP9.79□□□□□ -0.84
TRIM28-214ENST00000600840 HCSTQ9UBK5 93 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 PCDHA7Q9UN72 937 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 NOC2LQ9Y3T9 749 aaKnown RBP9.79□□□□□ -0.84
TRIM28-214ENST00000600840 ATP6V1DQ9Y5K8 247 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 MAFBQ9Y5Q3 323 aaPredicted RBP9.79□□□□□ -0.84
TRIM28-214ENST00000600840 ZDBF2Q9HCK1 2354 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 C5orf42Q9H799 3197 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 ADGRA3Q8IWK6 1321 aa9.79□□□□□ -0.84
TRIM28-214ENST00000600840 MYH15Q9Y2K3 1946 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 FAM237AA0A1B0GTK4 181 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 POTEMA6NI47 508 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 PP2D1A8MPX8 630 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 C5orf67F2Z3F1 127 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 ZNF862O60290 1169 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 GAS7O60861 476 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 C22orf31O95567 290 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 PDGFBP01127 241 aaPredicted RBP9.78□□□□□ -0.84
TRIM28-214ENST00000600840 VTNP04004 478 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 IBSPP21815 317 aaPredicted RBP9.78□□□□□ -0.84
TRIM28-214ENST00000600840 CDC25AP30304 524 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 KRT85P78386 507 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 UGCGQ16739 394 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 PAN2Q504Q3 1202 aaKnown RBP9.78□□□□□ -0.84
TRIM28-214ENST00000600840 HYIQ5T013 277 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 SHC4Q6S5L8 630 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 DTHD1Q6ZMT9 781 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 SMAP1Q8IYB5 467 aaPredicted RBP9.78□□□□□ -0.84
TRIM28-214ENST00000600840 ZNF579Q8NAF0 562 aaKnown RBP9.78□□□□□ -0.84
TRIM28-214ENST00000600840 TMEM87AQ8NBN3 555 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 RDM1Q8NG50 284 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 CLP1Q92989 425 aaKnown RBP9.78□□□□□ -0.84
TRIM28-214ENST00000600840 ZNF668Q96K58 619 aaPredicted RBP9.78□□□□□ -0.84
TRIM28-214ENST00000600840 SAMD11Q96NU1 681 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 CSRNP2Q9H175 543 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 GDPD2Q9HCC8 539 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 ERVK-5Q9HDB9 667 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 DISC1Q9NRI5 854 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 GABBR1Q9UBS5 961 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 CD207Q9UJ71 328 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 CEP131Q9UPN4 1083 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 GINS2Q9Y248 185 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 MRPL42Q9Y6G3 142 aaKnown RBP9.78□□□□□ -0.84
TRIM28-214ENST00000600840 SQORQ9Y6N5 450 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 KDM3AQ9Y4C1 1321 aa9.78□□□□□ -0.84
TRIM28-214ENST00000600840 USP34Q70CQ2 3546 aa9.77□□□□□ -0.84
TRIM28-214ENST00000600840 VWA3AA6NCI4 1184 aa9.77□□□□□ -0.85
TRIM28-214ENST00000600840 CUTAO60888 179 aa9.77□□□□□ -0.85
TRIM28-214ENST00000600840 GPR32O75388 356 aa9.77□□□□□ -0.85
TRIM28-214ENST00000600840 MED24O75448 989 aa9.77□□□□□ -0.85
TRIM28-214ENST00000600840 LYPLA2O95372 231 aa9.77□□□□□ -0.85
TRIM28-214ENST00000600840 AVPR2P30518 371 aa9.77□□□□□ -0.85
TRIM28-214ENST00000600840 SFNP31947 248 aa9.77□□□□□ -0.85
TRIM28-214ENST00000600840 LONP1P36776 959 aaKnown RBP9.77□□□□□ -0.85
TRIM28-214ENST00000600840 SLC26A2P50443 739 aa9.77□□□□□ -0.85
TRIM28-214ENST00000600840 CLCN3P51790 818 aa9.77□□□□□ -0.85
TRIM28-214ENST00000600840 NFX1Q12986 1120 aaKnown RBP9.77□□□□□ -0.85
TRIM28-214ENST00000600840 PAK2Q13177 524 aa9.77□□□□□ -0.85
TRIM28-214ENST00000600840 BTG3Q14201 252 aaPredicted RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms