RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 DENND3A2RUS2 1198 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 ASAP2O43150 1006 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 CYP11B2P19099 503 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 GLRA2P23416 452 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 LONP1P36776 959 aaKnown RBP16.9■□□□□ 0.3
LIG1-219ENST00000600055 HTRA4P83105 476 aaPredicted RBP16.9■□□□□ 0.3
LIG1-219ENST00000600055 TAP1Q03518 808 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 CAPSQ13938 189 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 BECN1Q14457 450 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 SLC39A14Q15043 492 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 TMEM119Q4V9L6 283 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 USP49Q70CQ1 688 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 AK8Q96MA6 479 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 CERS4Q9HA82 394 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 RGS18Q9NS28 235 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 DAXXQ9UER7 740 aaPredicted RBP16.9■□□□□ 0.3
LIG1-219ENST00000600055 ZDHHC9Q9Y397 364 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 C9IYK1 514 aa16.89■□□□□ 0.29
LIG1-219ENST00000600055 PDIA4P13667 645 aaKnown RBP16.89■□□□□ 0.29
LIG1-219ENST00000600055 UBA7P41226 1012 aa16.89■□□□□ 0.29
LIG1-219ENST00000600055 NASPP49321 788 aaPredicted RBP16.89■□□□□ 0.29
LIG1-219ENST00000600055 MXD4Q14582 209 aaPredicted RBP16.89■□□□□ 0.29
LIG1-219ENST00000600055 KARSQ15046 597 aaKnown RBP16.89■□□□□ 0.29
LIG1-219ENST00000600055 CRIPAKQ8N1N5 446 aa16.89■□□□□ 0.29
LIG1-219ENST00000600055 MCPH1Q8NEM0 835 aa16.89■□□□□ 0.29
LIG1-219ENST00000600055 LRRC15Q8TF66 581 aa16.89■□□□□ 0.29
LIG1-219ENST00000600055 BSNDQ8WZ55 320 aa16.89■□□□□ 0.29
LIG1-219ENST00000600055 EPSTI1Q96J88 318 aa16.89■□□□□ 0.29
LIG1-219ENST00000600055 ZNF396Q96N95 335 aaPredicted RBP16.89■□□□□ 0.29
LIG1-219ENST00000600055 YME1L1Q96TA2 773 aa16.89■□□□□ 0.29
LIG1-219ENST00000600055 RUSC1Q9BVN2 902 aa16.89■□□□□ 0.29
LIG1-219ENST00000600055 INO80BQ9C086 356 aaPredicted RBP16.89■□□□□ 0.29
LIG1-219ENST00000600055 INSL6Q9Y581 213 aa16.89■□□□□ 0.29
LIG1-219ENST00000600055 SRPRBQ9Y5M8 271 aaKnown RBP16.89■□□□□ 0.29
LIG1-219ENST00000600055 ZSCAN20P17040 1043 aaPredicted RBP16.88■□□□□ 0.29
LIG1-219ENST00000600055 SFPQP23246 707 aaKnown RBP eCLIP16.88■□□□□ 0.29
LIG1-219ENST00000600055 SARSP49591 514 aaKnown RBP16.88■□□□□ 0.29
LIG1-219ENST00000600055 GATMP50440 423 aa16.88■□□□□ 0.29
LIG1-219ENST00000600055 PTENP60484 403 aa16.88■□□□□ 0.29
LIG1-219ENST00000600055 STK38Q15208 465 aa16.88■□□□□ 0.29
LIG1-219ENST00000600055 CATSPER4Q7RTX7 472 aa16.88■□□□□ 0.29
LIG1-219ENST00000600055 SRGAP1Q7Z6B7 1085 aa16.88■□□□□ 0.29
LIG1-219ENST00000600055 NPAS4Q8IUM7 802 aa16.88■□□□□ 0.29
LIG1-219ENST00000600055 LINC00301Q8NCQ3 95 aa16.88■□□□□ 0.29
LIG1-219ENST00000600055 CDK5RAP3Q96JB5 506 aa16.88■□□□□ 0.29
LIG1-219ENST00000600055 CDX2Q99626 313 aaPredicted RBP16.88■□□□□ 0.29
LIG1-219ENST00000600055 NT5C3AQ9H0P0 336 aa16.88■□□□□ 0.29
LIG1-219ENST00000600055 LINC01553A4QN01 128 aa16.87■□□□□ 0.29
LIG1-219ENST00000600055 BRD1O95696 1058 aa16.87■□□□□ 0.29
LIG1-219ENST00000600055 SSBP05455 408 aaKnown RBP eCLIP16.87■□□□□ 0.29
LIG1-219ENST00000600055 PHKA2P46019 1235 aa16.87■□□□□ 0.29
LIG1-219ENST00000600055 FAM189BP81408 668 aa16.87■□□□□ 0.29
LIG1-219ENST00000600055 TFDP1Q14186 410 aa16.87■□□□□ 0.29
LIG1-219ENST00000600055 RINT1Q6NUQ1 792 aa16.87■□□□□ 0.29
LIG1-219ENST00000600055 C1orf186Q6ZWK4 172 aa16.87■□□□□ 0.29
LIG1-219ENST00000600055 SLC24A5Q71RS6 500 aa16.87■□□□□ 0.29
LIG1-219ENST00000600055 SP7Q8TDD2 431 aaPredicted RBP16.87■□□□□ 0.29
LIG1-219ENST00000600055 MYLIPQ8WY64 445 aa16.87■□□□□ 0.29
LIG1-219ENST00000600055 SYMPKQ92797 1274 aaKnown RBP16.87■□□□□ 0.29
LIG1-219ENST00000600055 CALML4Q96GE6 196 aa16.87■□□□□ 0.29
LIG1-219ENST00000600055 PRDM12Q9H4Q4 367 aa16.87■□□□□ 0.29
LIG1-219ENST00000600055 RC3H2Q9HBD1 1191 aaKnown RBP16.87■□□□□ 0.29
LIG1-219ENST00000600055 C1orf112Q9NSG2 853 aa16.87■□□□□ 0.29
LIG1-219ENST00000600055 LRFN2Q9ULH4 789 aa16.87■□□□□ 0.29
LIG1-219ENST00000600055 PIN4Q9Y237 131 aaKnown RBP16.87■□□□□ 0.29
LIG1-219ENST00000600055 EPOPA6NHQ4 379 aa16.86■□□□□ 0.29
LIG1-219ENST00000600055 LRRIQ4A6NIV6 560 aa16.86■□□□□ 0.29
LIG1-219ENST00000600055 RFXAPO00287 272 aa16.86■□□□□ 0.29
LIG1-219ENST00000600055 SPTLC2O15270 562 aa16.86■□□□□ 0.29
LIG1-219ENST00000600055 DGKIO75912 1065 aa16.86■□□□□ 0.29
LIG1-219ENST00000600055 PLA2G4BP0C869 781 aa16.86■□□□□ 0.29
LIG1-219ENST00000600055 STAG3L1P0CL83 205 aa16.86■□□□□ 0.29
LIG1-219ENST00000600055 PLCG1P19174 1290 aa16.86■□□□□ 0.29
LIG1-219ENST00000600055 SLC12A3P55017 1021 aa16.86■□□□□ 0.29
LIG1-219ENST00000600055 DNM1Q05193 864 aaKnown RBP16.86■□□□□ 0.29
LIG1-219ENST00000600055 IFNLR1Q8IU57 520 aaPredicted RBP16.86■□□□□ 0.29
LIG1-219ENST00000600055 SYT2Q8N9I0 419 aaPredicted RBP16.86■□□□□ 0.29
LIG1-219ENST00000600055 KRI1Q8N9T8 703 aaKnown RBP16.86■□□□□ 0.29
LIG1-219ENST00000600055 ZNF689Q96CS4 500 aaPredicted RBP16.86■□□□□ 0.29
LIG1-219ENST00000600055 CHAMP1Q96JM3 812 aa16.86■□□□□ 0.29
LIG1-219ENST00000600055 CCSER1Q9C0I3 900 aa16.86■□□□□ 0.29
LIG1-219ENST00000600055 BLOC1S4Q9NUP1 217 aa16.86■□□□□ 0.29
LIG1-219ENST00000600055 MTUS1Q9ULD2 1270 aa16.86■□□□□ 0.29
LIG1-219ENST00000600055 PCDHB7Q9Y5E2 793 aa16.86■□□□□ 0.29
LIG1-219ENST00000600055 MORC2Q9Y6X9 1032 aaPredicted RBP16.86■□□□□ 0.29
LIG1-219ENST00000600055 CHD9Q3L8U1 2897 aa16.85■□□□□ 0.29
LIG1-219ENST00000600055 INO80B-WBP1J3KQ70 363 aa16.85■□□□□ 0.29
LIG1-219ENST00000600055 SLC26A4O43511 780 aa16.85■□□□□ 0.29
LIG1-219ENST00000600055 HIP1RO75146 1068 aa16.85■□□□□ 0.29
LIG1-219ENST00000600055 SLC34A2O95436 690 aa16.85■□□□□ 0.29
LIG1-219ENST00000600055 HOXA11P31270 313 aaPredicted RBP16.85■□□□□ 0.29
LIG1-219ENST00000600055 MBTD1Q05BQ5 628 aa16.85■□□□□ 0.29
LIG1-219ENST00000600055 POU5F1BQ06416 359 aa16.85■□□□□ 0.29
LIG1-219ENST00000600055 RAD51AP2Q09MP3 1159 aa16.85■□□□□ 0.29
LIG1-219ENST00000600055 DHX8Q14562 1220 aaKnown RBP16.85■□□□□ 0.29
LIG1-219ENST00000600055 PAN2Q504Q3 1202 aaKnown RBP16.85■□□□□ 0.29
LIG1-219ENST00000600055 FAM43BQ6ZT52 329 aaPredicted RBP16.85■□□□□ 0.29
LIG1-219ENST00000600055 ECHDC2Q86YB7 292 aa16.85■□□□□ 0.29
LIG1-219ENST00000600055 DAW1Q8N136 415 aa16.85■□□□□ 0.29
LIG1-219ENST00000600055 RASSF8Q8NHQ8 419 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms