RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 TRIP12Q14669 1992 aaPredicted RBP13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 DYNC1LI2O43237 492 aaPredicted RBP13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 QARSP47897 775 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 NUBP1P53384 320 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 PSMC5P62195 406 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 DLX2Q07687 328 aaPredicted RBP13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 SNW1Q13573 536 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 CTTNQ14247 550 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 PTPROQ16827 1216 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 TMEM119Q4V9L6 283 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 BRDTQ58F21 947 aaPredicted RBP13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 HYIQ5T013 277 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 TMEM63BQ5T3F8 832 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 POTEGQ6S5H5 508 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 CATSPER3Q86XQ3 398 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 KCTD17Q8N5Z5 321 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 CNNM3Q8NE01 707 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 ENGASEQ8NFI3 743 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 CCDC43Q96MW1 224 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 GPR20Q99678 358 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 NUP62CLQ9H1M0 184 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 BCAS3Q9H6U6 928 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 ZSWIM4Q9H7M6 989 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 ZNF302Q9NR11 478 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 RGL1Q9NZL6 768 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 GABBR1Q9UBS5 961 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 KIAA1024Q9UPX6 916 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 Q9Y3F1 56 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 ATRXP46100 2492 aa13.42□□□□□ -0.26
SHKBP1-213ENST00000597325 A0A087X0B3 334 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 TCF7P36402 384 aaPredicted RBP13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 CPT1AP50416 773 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 SIGLEC14Q08ET2 396 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 TCTN1Q2MV58 587 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 HSDL1Q3SXM5 330 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 CCDC183Q5T5S1 534 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 SWSAP1Q6NVH7 229 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 KANK3Q6NY19 840 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 CAVIN1Q6NZI2 390 aaKnown RBP13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 ABHD15Q6UXT9 468 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 KRBA2Q6ZNG9 492 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 EP400NLQ6ZTU2 488 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 RPAINQ86UA6 219 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 CKAP2LQ8IYA6 745 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 AFG1LQ8WV93 481 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 TIGD1Q96MW7 591 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 PNMA5Q96PV4 448 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 HSD17B14Q9BPX1 270 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 CLSTN2Q9H4D0 955 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 SERTAD1Q9UHV2 236 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 DNM3Q9UQ16 869 aa13.41□□□□□ -0.26
SHKBP1-213ENST00000597325 EMSYQ7Z589 1322 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 IGSF9BQ9UPX0 1349 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 EP300Q09472 2414 aaPredicted RBP13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 GSTTP1A0A1W2PQM5 241 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 GALR2O43603 387 aaPredicted RBP13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 ACTN4O43707 911 aaKnown RBP13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 ATG7O95352 703 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 MMP3P08254 477 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 SLFN14P0C7P3 912 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 SPATA31C1P0DKV0 1188 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 PRKCEQ02156 737 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 E2F4Q16254 413 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 DGKDQ16760 1214 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 LONRF3Q496Y0 759 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 UTP14CQ5TAP6 766 aaKnown RBP13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 PDXDC2PQ6P474 469 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 CCDC60Q8IWA6 550 aaPredicted RBP13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 ADSSL1Q8N142 457 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 LARP4BQ92615 738 aaKnown RBP13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 RAD54LQ92698 747 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 GLG1Q92896 1179 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 RMDN1Q96DB5 314 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 NACC1Q96RE7 527 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 TNMDQ9H2S6 317 aa13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 NSUN3Q9H649 340 aaKnown RBP13.4□□□□□ -0.26
SHKBP1-213ENST00000597325 LOXHD1Q8IVV2 1947 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 LOC730098B7Z3J9 87 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 H3BNC9 293 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 NCK2O43639 380 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 SLITRK3O94933 977 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 LYPLA2O95372 231 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 CXCL10P02778 98 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 SSBP05455 408 aaKnown RBP eCLIP13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 STAT5BP51692 787 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 PURAQ00577 322 aaKnown RBP13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 AMPD3Q01432 767 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 SMAD4Q13485 552 aaKnown RBP13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 CBX2Q14781 532 aaPredicted RBP13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 CLUL1Q15846 466 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 UGCGQ16739 394 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 EPC2Q52LR7 807 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 SV2BQ7L1I2 683 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 C4orf19Q8IY42 314 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 RETREG2Q8NC44 543 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 SP7Q8TDD2 431 aaPredicted RBP13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 AFAP1L1Q8TED9 768 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 FAM167AQ96KS9 214 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 LRRC27Q9C0I9 530 aa13.39□□□□□ -0.27
SHKBP1-213ENST00000597325 SMARCAD1Q9H4L7 1026 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms