RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 MSRAQ9UJ68 235 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 CDY2AQ9Y6F7 541 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 TTC3P53804 2025 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 KDM3AQ9Y4C1 1321 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 GHRP10912 638 aa12.61□□□□□ -0.39
SMAD4-211ENST00000590499 GUCY1B3Q02153 619 aa12.61□□□□□ -0.39
SMAD4-211ENST00000590499 SPIRE1Q08AE8 756 aa12.61□□□□□ -0.39
SMAD4-211ENST00000590499 TARBP2Q15633 366 aaKnown RBP12.61□□□□□ -0.39
SMAD4-211ENST00000590499 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.61□□□□□ -0.39
SMAD4-211ENST00000590499 TMCO2Q7Z6W1 182 aaPredicted RBP12.61□□□□□ -0.39
SMAD4-211ENST00000590499 CKAP2LQ8IYA6 745 aa12.61□□□□□ -0.39
SMAD4-211ENST00000590499 KIAA0319LQ8IZA0 1049 aa12.61□□□□□ -0.39
SMAD4-211ENST00000590499 LINC01465Q8N7H1 131 aa12.61□□□□□ -0.39
SMAD4-211ENST00000590499 APBB2Q92870 758 aa12.61□□□□□ -0.39
SMAD4-211ENST00000590499 TMX3Q96JJ7 454 aa12.61□□□□□ -0.39
SMAD4-211ENST00000590499 CEP89Q96ST8 783 aa12.61□□□□□ -0.39
SMAD4-211ENST00000590499 IFIH1Q9BYX4 1025 aaKnown RBP12.61□□□□□ -0.39
SMAD4-211ENST00000590499 CEP131Q9UPN4 1083 aa12.61□□□□□ -0.39
SMAD4-211ENST00000590499 TRPV2Q9Y5S1 764 aa12.61□□□□□ -0.39
SMAD4-211ENST00000590499 SPTBN5Q9NRC6 3674 aaKnown RBP12.61□□□□□ -0.39
SMAD4-211ENST00000590499 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.6□□□□□ -0.39
SMAD4-211ENST00000590499 ARHGEF15O94989 841 aa12.6□□□□□ -0.39
SMAD4-211ENST00000590499 GJB5O95377 273 aa12.6□□□□□ -0.39
SMAD4-211ENST00000590499 IER5Q5VY09 327 aa12.6□□□□□ -0.39
SMAD4-211ENST00000590499 TSHZ1Q6ZSZ6 1077 aa12.6□□□□□ -0.39
SMAD4-211ENST00000590499 NME8Q8N427 588 aa12.6□□□□□ -0.39
SMAD4-211ENST00000590499 ZSCAN1Q8NBB4 408 aa12.6□□□□□ -0.39
SMAD4-211ENST00000590499 MYLIPQ8WY64 445 aa12.6□□□□□ -0.39
SMAD4-211ENST00000590499 FOXP1Q9H334 677 aaPredicted RBP12.6□□□□□ -0.39
SMAD4-211ENST00000590499 AGO3Q9H9G7 860 aaKnown RBP12.6□□□□□ -0.39
SMAD4-211ENST00000590499 NXF1Q9UBU9 619 aaKnown RBP12.6□□□□□ -0.39
SMAD4-211ENST00000590499 SQORQ9Y6N5 450 aa12.6□□□□□ -0.39
SMAD4-211ENST00000590499 COL4A6Q14031 1691 aa12.6□□□□□ -0.39
SMAD4-211ENST00000590499 ARID2Q68CP9 1835 aa12.6□□□□□ -0.39
SMAD4-211ENST00000590499 CA3P07451 260 aa12.59□□□□□ -0.39
SMAD4-211ENST00000590499 MCM2P49736 904 aa12.59□□□□□ -0.39
SMAD4-211ENST00000590499 TMEM62Q0P6H9 643 aa12.59□□□□□ -0.39
SMAD4-211ENST00000590499 SAFBQ15424 915 aaKnown RBP eCLIP12.59□□□□□ -0.39
SMAD4-211ENST00000590499 TRMT1LQ7Z2T5 733 aaKnown RBP12.59□□□□□ -0.39
SMAD4-211ENST00000590499 SLFN12Q8IYM2 578 aa12.59□□□□□ -0.39
SMAD4-211ENST00000590499 MTMR9Q96QG7 549 aa12.59□□□□□ -0.39
SMAD4-211ENST00000590499 NIFKQ9BYG3 293 aaKnown RBP12.59□□□□□ -0.39
SMAD4-211ENST00000590499 CELF4Q9BZC1 486 aaKnown RBP12.59□□□□□ -0.39
SMAD4-211ENST00000590499 SLC28A3Q9HAS3 691 aa12.59□□□□□ -0.39
SMAD4-211ENST00000590499 LCHNA4D1U4 455 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 TMEM150BA6NC51 233 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 KIF28PB7ZC32 967 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 M0QZ92 97 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 MAGEB2O15479 319 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 NEMFO60524 1076 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 AMHP03971 560 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 VCANP13611 3396 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 PSMC5P62195 406 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 HTRA4P83105 476 aaPredicted RBP12.58□□□□□ -0.4
SMAD4-211ENST00000590499 TAP1Q03518 808 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 XKR3Q5GH77 459 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 PPP2R2DQ66LE6 453 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 ANO5Q75V66 913 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 USP38Q8NB14 1042 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 FAM184AQ8NB25 1140 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 BANK1Q8NDB2 785 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 LINC01599Q8WXQ3 324 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 TMEM60Q9H2L4 133 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 NRBP2Q9NSY0 501 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 WRAP73Q9P2S5 460 aaPredicted RBP12.58□□□□□ -0.4
SMAD4-211ENST00000590499 GTF3C3Q9Y5Q9 886 aa12.58□□□□□ -0.4
SMAD4-211ENST00000590499 COL4A4P53420 1690 aaPredicted RBP12.57□□□□□ -0.4
SMAD4-211ENST00000590499 PRRC2BQ5JSZ5 2229 aaKnown RBP12.57□□□□□ -0.4
SMAD4-211ENST00000590499 IGKV6-21A0A0C4DH24 114 aa12.57□□□□□ -0.4
SMAD4-211ENST00000590499 GPR32O75388 356 aa12.57□□□□□ -0.4
SMAD4-211ENST00000590499 P4HBP07237 508 aaKnown RBP12.57□□□□□ -0.4
SMAD4-211ENST00000590499 U2AF2P26368 475 aaKnown RBP eCLIP12.57□□□□□ -0.4
SMAD4-211ENST00000590499 CD52P31358 61 aa12.57□□□□□ -0.4
SMAD4-211ENST00000590499 QARSP47897 775 aaKnown RBP12.57□□□□□ -0.4
SMAD4-211ENST00000590499 CLCN3P51790 818 aa12.57□□□□□ -0.4
SMAD4-211ENST00000590499 ADGRE1Q14246 886 aa12.57□□□□□ -0.4
SMAD4-211ENST00000590499 EPHA7Q15375 998 aa12.57□□□□□ -0.4
SMAD4-211ENST00000590499 CALCRLQ16602 461 aa12.57□□□□□ -0.4
SMAD4-211ENST00000590499 NOSTRINQ8IVI9 506 aa12.57□□□□□ -0.4
SMAD4-211ENST00000590499 MYOCDQ8IZQ8 938 aa12.57□□□□□ -0.4
SMAD4-211ENST00000590499 TMEM40Q8WWA1 233 aa12.57□□□□□ -0.4
SMAD4-211ENST00000590499 TOP1MTQ969P6 601 aa12.57□□□□□ -0.4
SMAD4-211ENST00000590499 RAD9AQ99638 391 aa12.57□□□□□ -0.4
SMAD4-211ENST00000590499 PRDM12Q9H4Q4 367 aa12.57□□□□□ -0.4
SMAD4-211ENST00000590499 BAG4O95429 457 aaKnown RBP12.56□□□□□ -0.4
SMAD4-211ENST00000590499 VTNP04004 478 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 FOSL2P15408 326 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 TRAPPC10P48553 1259 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 ORC2Q13416 577 aaPredicted RBP12.56□□□□□ -0.4
SMAD4-211ENST00000590499 MTERF2Q49AM1 385 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 NCAPH2Q6IBW4 605 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 EFCAB12Q6NXP0 572 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 SPRED2Q7Z698 418 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 RTN4RL1Q86UN2 441 aaPredicted RBP12.56□□□□□ -0.4
SMAD4-211ENST00000590499 C4orf19Q8IY42 314 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 LRRC71Q8N4P6 559 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 METTL13Q8N6R0 699 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 LXNQ9BS40 222 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 ADAMTS10Q9H324 1103 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 TMX1Q9H3N1 280 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms