RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 SENP7Q9BQF6 1050 aa9.34□□□□□ -0.91
VMP1-208ENST00000588617 WDR12Q9GZL7 423 aaKnown RBP9.34□□□□□ -0.91
VMP1-208ENST00000588617 PDGFDQ9GZP0 370 aaPredicted RBP9.34□□□□□ -0.91
VMP1-208ENST00000588617 VPS11Q9H270 941 aa9.34□□□□□ -0.91
VMP1-208ENST00000588617 ADAMTS10Q9H324 1103 aa9.34□□□□□ -0.91
VMP1-208ENST00000588617 PALD1Q9ULE6 856 aa9.34□□□□□ -0.91
VMP1-208ENST00000588617 USP18Q9UMW8 372 aa9.34□□□□□ -0.91
VMP1-208ENST00000588617 STXBP5LQ9Y2K9 1186 aa9.34□□□□□ -0.91
VMP1-208ENST00000588617 SGSM2O43147 1006 aa9.33□□□□□ -0.92
VMP1-208ENST00000588617 PRKCAP17252 672 aa9.33□□□□□ -0.92
VMP1-208ENST00000588617 POLD3Q15054 466 aaPredicted RBP9.33□□□□□ -0.92
VMP1-208ENST00000588617 CPSF6Q16630 551 aaKnown RBP eCLIP9.33□□□□□ -0.92
VMP1-208ENST00000588617 MAEAQ7L5Y9 396 aa9.33□□□□□ -0.92
VMP1-208ENST00000588617 KANSL1Q7Z3B3 1105 aa9.33□□□□□ -0.92
VMP1-208ENST00000588617 SLC41A1Q8IVJ1 513 aa9.33□□□□□ -0.92
VMP1-208ENST00000588617 TEX19Q8NA77 164 aa9.33□□□□□ -0.92
VMP1-208ENST00000588617 HDAC10Q969S8 669 aa9.33□□□□□ -0.92
VMP1-208ENST00000588617 CARS2Q9HA77 564 aaKnown RBP9.33□□□□□ -0.92
VMP1-208ENST00000588617 DMRT3Q9NQL9 472 aa9.33□□□□□ -0.92
VMP1-208ENST00000588617 ACSL6Q9UKU0 697 aa9.33□□□□□ -0.92
VMP1-208ENST00000588617 NR2E3Q9Y5X4 410 aa9.33□□□□□ -0.92
VMP1-208ENST00000588617 CDY2AQ9Y6F7 541 aa9.33□□□□□ -0.92
VMP1-208ENST00000588617 DGKBQ9Y6T7 804 aa9.33□□□□□ -0.92
VMP1-208ENST00000588617 KPNA5O15131 536 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 ZGLP1P0C6A0 271 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 AOAHP28039 575 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 IL12RB1P42701 662 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 RGS3P49796 1198 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 FOXD4Q12950 439 aaPredicted RBP9.32□□□□□ -0.92
VMP1-208ENST00000588617 IL10RAQ13651 578 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 KIR3DS1Q14943 382 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 ADRM1Q16186 407 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 TUBB8Q3ZCM7 444 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 KLHDC10Q6PID8 442 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 LMBR1LQ6UX01 489 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 COL23A1Q86Y22 540 aaPredicted RBP9.32□□□□□ -0.92
VMP1-208ENST00000588617 DPF2Q92785 391 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 KAT5Q92993 513 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 FOXB1Q99853 325 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 UCKL1Q9NWZ5 548 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 C9orf78Q9NZ63 289 aaPredicted RBP9.32□□□□□ -0.92
VMP1-208ENST00000588617 CORO2BQ9UQ03 480 aa9.32□□□□□ -0.92
VMP1-208ENST00000588617 hCG_1642624A0A1W2PR95 340 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 SLC26A4O43511 780 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 FTLP02792 175 aaPredicted RBP9.31□□□□□ -0.92
VMP1-208ENST00000588617 GLI4P10075 376 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 GSPT1P15170 499 aaKnown RBP9.31□□□□□ -0.92
VMP1-208ENST00000588617 FAHP16930 419 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 TNFSF4P23510 183 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 CHKAP35790 457 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 CHRNA4P43681 627 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 IKZF1Q13422 519 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 SNX17Q15036 470 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 MUM1L1Q5H9M0 696 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 NME8Q8N427 588 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 ANKS4BQ8N8V4 417 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 SPATA5Q8NB90 893 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 NETO2Q8NC67 525 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 ARRDC4Q8NCT1 418 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 PHKBQ93100 1093 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 ADI1Q9BV57 179 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 CERS4Q9HA82 394 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 GPRC5BQ9NZH0 403 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 SLAMF8Q9P0V8 285 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 BTBD7Q9P203 1132 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 CDC23Q9UJX2 597 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 FBXO9Q9UK97 447 aaPredicted RBP9.31□□□□□ -0.92
VMP1-208ENST00000588617 PCDHGB3Q9Y5G1 929 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 SNX13Q9Y5W8 968 aa9.31□□□□□ -0.92
VMP1-208ENST00000588617 LRRC10BA6NIK2 292 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 CELA3BP08861 270 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 ABCB4P21439 1286 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 WASP42768 502 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 CCT5P48643 541 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 MAP2K6P52564 334 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 IRX6P78412 446 aaPredicted RBP9.3□□□□□ -0.92
VMP1-208ENST00000588617 GPSM2P81274 684 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 TNFAIP2Q03169 654 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 MAPRE1Q15691 268 aaKnown RBP9.3□□□□□ -0.92
VMP1-208ENST00000588617 ELF2Q15723 593 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 RALGPS1Q5JS13 557 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 DGKKQ5KSL6 1271 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 TTLL11Q8NHH1 800 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 RPGRQ92834 1020 aaKnown RBP9.3□□□□□ -0.92
VMP1-208ENST00000588617 TRIM63Q969Q1 353 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 RGMAQ96B86 450 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 CDK5RAP3Q96JB5 506 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 PLCD4Q9BRC7 762 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 RXFP1Q9HBX9 757 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 DCP1AQ9NPI6 582 aaPredicted RBP9.3□□□□□ -0.92
VMP1-208ENST00000588617 ARHGAP28Q9P2N2 729 aa9.3□□□□□ -0.92
VMP1-208ENST00000588617 CFAP20Q9Y6A4 193 aaKnown RBP9.3□□□□□ -0.92
VMP1-208ENST00000588617 C1QTNF9BB2RNN3 333 aa9.29□□□□□ -0.92
VMP1-208ENST00000588617 NFIBO00712 420 aa9.29□□□□□ -0.92
VMP1-208ENST00000588617 ADAM23O75077 832 aa9.29□□□□□ -0.92
VMP1-208ENST00000588617 MYF5P13349 255 aa9.29□□□□□ -0.92
VMP1-208ENST00000588617 MC4RP32245 332 aa9.29□□□□□ -0.92
VMP1-208ENST00000588617 PPM1AP35813 382 aa9.29□□□□□ -0.92
VMP1-208ENST00000588617 IL6STP40189 918 aaPredicted RBP9.29□□□□□ -0.92
VMP1-208ENST00000588617 CASP5P51878 434 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms