RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 GPR42O15529 346 aa8.79□□□□□ -1
SS18-214ENST00000580003 GPR39O43194 453 aa8.79□□□□□ -1
SS18-214ENST00000580003 PFKMP08237 780 aa8.79□□□□□ -1
SS18-214ENST00000580003 XPAP23025 273 aaPredicted RBP8.79□□□□□ -1
SS18-214ENST00000580003 MANFP55145 182 aaKnown RBP8.79□□□□□ -1
SS18-214ENST00000580003 CCDC62Q6P9F0 684 aa8.79□□□□□ -1
SS18-214ENST00000580003 SPATS2Q86XZ4 545 aaKnown RBP8.79□□□□□ -1
SS18-214ENST00000580003 CHST13Q8NET6 341 aa8.79□□□□□ -1
SS18-214ENST00000580003 RSAD2Q8WXG1 361 aa8.79□□□□□ -1
SS18-214ENST00000580003 DPYSL5Q9BPU6 564 aa8.79□□□□□ -1
SS18-214ENST00000580003 MSL2Q9HCI7 577 aa8.79□□□□□ -1
SS18-214ENST00000580003 RBM8AQ9Y5S9 174 aaKnown RBP8.79□□□□□ -1
SS18-214ENST00000580003 NUMBLQ9Y6R0 609 aa8.79□□□□□ -1
SS18-214ENST00000580003 NRP2O60462 931 aa8.78□□□□□ -1
SS18-214ENST00000580003 FSBPO95073 299 aa8.78□□□□□ -1
SS18-214ENST00000580003 CLEC2LP0C7M8 214 aa8.78□□□□□ -1
SS18-214ENST00000580003 ATP2C1P98194 919 aaPredicted RBP8.78□□□□□ -1
SS18-214ENST00000580003 HGFACQ04756 655 aa8.78□□□□□ -1
SS18-214ENST00000580003 RNF219Q5W0B1 726 aaPredicted RBP8.78□□□□□ -1
SS18-214ENST00000580003 ACAP3Q96P50 834 aa8.78□□□□□ -1
SS18-214ENST00000580003 OSBPL6Q9BZF3 934 aa8.78□□□□□ -1
SS18-214ENST00000580003 GOLGA8BA8MQT2 603 aa8.77□□□□□ -1.01
SS18-214ENST00000580003 MATN2O00339 956 aa8.77□□□□□ -1.01
SS18-214ENST00000580003 HNRNPLP14866 589 aaKnown RBP eCLIP8.77□□□□□ -1.01
SS18-214ENST00000580003 GPR15P49685 360 aa8.77□□□□□ -1.01
SS18-214ENST00000580003 PPARAQ07869 468 aa8.77□□□□□ -1.01
SS18-214ENST00000580003 SPATS1Q496A3 300 aa8.77□□□□□ -1.01
SS18-214ENST00000580003 TCTN3Q6NUS6 607 aa8.77□□□□□ -1.01
SS18-214ENST00000580003 LHFPL2Q6ZUX7 228 aa8.77□□□□□ -1.01
SS18-214ENST00000580003 CLEC14AQ86T13 490 aa8.77□□□□□ -1.01
SS18-214ENST00000580003 TTC9BQ8N6N2 239 aa8.77□□□□□ -1.01
SS18-214ENST00000580003 PLA2G15Q8NCC3 412 aa8.77□□□□□ -1.01
SS18-214ENST00000580003 GAB3Q8WWW8 586 aa8.77□□□□□ -1.01
SS18-214ENST00000580003 CFHR4Q92496 578 aa8.77□□□□□ -1.01
SS18-214ENST00000580003 FAM126AQ9BYI3 521 aaPredicted RBP8.77□□□□□ -1.01
SS18-214ENST00000580003 SLC6A15Q9H2J7 730 aa8.77□□□□□ -1.01
SS18-214ENST00000580003 SMPD4Q9NXE4 827 aa8.77□□□□□ -1.01
SS18-214ENST00000580003 KRTAP4-8A0A0G2JLE6 195 aa8.76□□□□□ -1.01
SS18-214ENST00000580003 C2orf78A6NCI8 922 aa8.76□□□□□ -1.01
SS18-214ENST00000580003 PRRG2O14669 202 aa8.76□□□□□ -1.01
SS18-214ENST00000580003 SLC26A4O43511 780 aa8.76□□□□□ -1.01
SS18-214ENST00000580003 CANXP27824 592 aaKnown RBP8.76□□□□□ -1.01
SS18-214ENST00000580003 RPS19P39019 145 aaKnown RBP8.76□□□□□ -1.01
SS18-214ENST00000580003 NRG3P56975 720 aa8.76□□□□□ -1.01
SS18-214ENST00000580003 BPIFB4P59827 614 aa8.76□□□□□ -1.01
SS18-214ENST00000580003 TCIRG1Q13488 830 aa8.76□□□□□ -1.01
SS18-214ENST00000580003 PDCD1Q15116 288 aa8.76□□□□□ -1.01
SS18-214ENST00000580003 CCDC178Q5BJE1 867 aa8.76□□□□□ -1.01
SS18-214ENST00000580003 CT83Q5H943 113 aa8.76□□□□□ -1.01
SS18-214ENST00000580003 PRRT2Q7Z6L0 340 aaPredicted RBP8.76□□□□□ -1.01
SS18-214ENST00000580003 DDX42Q86XP3 938 aaKnown RBP eCLIP8.76□□□□□ -1.01
SS18-214ENST00000580003 UIMC1Q96RL1 719 aa8.76□□□□□ -1.01
SS18-214ENST00000580003 ZFR2Q9UPR6 939 aaKnown RBP8.76□□□□□ -1.01
SS18-214ENST00000580003 A0A0A6YYK5 440 aaPredicted RBP8.75□□□□□ -1.01
SS18-214ENST00000580003 PMS2P1A4D2B8 440 aa8.75□□□□□ -1.01
SS18-214ENST00000580003 GOLGA8AA7E2F4 631 aa8.75□□□□□ -1.01
SS18-214ENST00000580003 POU3F3P20264 500 aaPredicted RBP8.75□□□□□ -1.01
SS18-214ENST00000580003 ADCY7P51828 1080 aa8.75□□□□□ -1.01
SS18-214ENST00000580003 FSCN1Q16658 493 aaKnown RBP8.75□□□□□ -1.01
SS18-214ENST00000580003 UGT8Q16880 541 aa8.75□□□□□ -1.01
SS18-214ENST00000580003 KRT40Q6A162 431 aa8.75□□□□□ -1.01
SS18-214ENST00000580003 SHCBP1Q8NEM2 672 aa8.75□□□□□ -1.01
SS18-214ENST00000580003 RABGGTAQ92696 567 aa8.75□□□□□ -1.01
SS18-214ENST00000580003 OR14A2Q96R54 314 aa8.75□□□□□ -1.01
SS18-214ENST00000580003 SOX7Q9BT81 388 aa8.75□□□□□ -1.01
SS18-214ENST00000580003 NELFAQ9H3P2 528 aa8.75□□□□□ -1.01
SS18-214ENST00000580003 C14orf93Q9H972 538 aaKnown RBP8.75□□□□□ -1.01
SS18-214ENST00000580003 ATP8A1Q9Y2Q0 1164 aa8.75□□□□□ -1.01
SS18-214ENST00000580003 NCANO14594 1321 aa8.75□□□□□ -1.01
SS18-214ENST00000580003 KRTAP9-7A8MTY7 169 aa8.74□□□□□ -1.01
SS18-214ENST00000580003 EFEMP1Q12805 493 aa8.74□□□□□ -1.01
SS18-214ENST00000580003 ICAM4Q14773 271 aa8.74□□□□□ -1.01
SS18-214ENST00000580003 HS1BP3Q53T59 392 aa8.74□□□□□ -1.01
SS18-214ENST00000580003 PITRM1Q5JRX3 1037 aa8.74□□□□□ -1.01
SS18-214ENST00000580003 LMBR1LQ6UX01 489 aa8.74□□□□□ -1.01
SS18-214ENST00000580003 ANKRD53Q8N9V6 530 aa8.74□□□□□ -1.01
SS18-214ENST00000580003 OR14C36Q8NHC7 312 aa8.74□□□□□ -1.01
SS18-214ENST00000580003 AHCYL2Q96HN2 611 aaKnown RBP8.74□□□□□ -1.01
SS18-214ENST00000580003 RPL10LQ96L21 214 aaKnown RBP8.74□□□□□ -1.01
SS18-214ENST00000580003 C8orf49Q96NF6 230 aa8.74□□□□□ -1.01
SS18-214ENST00000580003 PLA2G12BQ9BX93 195 aa8.74□□□□□ -1.01
SS18-214ENST00000580003 DEF6Q9H4E7 631 aa8.74□□□□□ -1.01
SS18-214ENST00000580003 PRSS50Q9UI38 385 aa8.74□□□□□ -1.01
SS18-214ENST00000580003 ST6GALNAC2Q9UJ37 374 aa8.74□□□□□ -1.01
SS18-214ENST00000580003 PATE3B3GLJ2 98 aa8.73□□□□□ -1.01
SS18-214ENST00000580003 FOXS1O43638 330 aa8.73□□□□□ -1.01
SS18-214ENST00000580003 ZNF623O75123 536 aa8.73□□□□□ -1.01
SS18-214ENST00000580003 RAD17O75943 681 aa8.73□□□□□ -1.01
SS18-214ENST00000580003 PRKD3O94806 890 aa8.73□□□□□ -1.01
SS18-214ENST00000580003 LPLP06858 475 aa8.73□□□□□ -1.01
SS18-214ENST00000580003 ENPP1P22413 925 aa8.73□□□□□ -1.01
SS18-214ENST00000580003 MAGEA10P43363 369 aaPredicted RBP8.73□□□□□ -1.01
SS18-214ENST00000580003 RIN1Q13671 783 aa8.73□□□□□ -1.01
SS18-214ENST00000580003 GLB1L2Q8IW92 636 aa8.73□□□□□ -1.01
SS18-214ENST00000580003 DNERQ8NFT8 737 aa8.73□□□□□ -1.01
SS18-214ENST00000580003 COG1Q8WTW3 980 aa8.73□□□□□ -1.01
SS18-214ENST00000580003 EAF2Q96CJ1 260 aaPredicted RBP8.73□□□□□ -1.01
SS18-214ENST00000580003 KCTD10Q9H3F6 313 aa8.73□□□□□ -1.01
SS18-214ENST00000580003 VTA1Q9NP79 307 aa8.73□□□□□ -1.01
SS18-214ENST00000580003 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms