RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 FSD2A1L4K1 749 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 KBTBD13C9JR72 458 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 H0YCG3 227 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 PSMA7O14818 248 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 MYBP10242 640 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 CAPN2P17655 700 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 TMOD1P28289 359 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 DNM2P50570 870 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 CLCN3P51790 818 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 SMTNP53814 917 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 GTF2BQ00403 316 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 POU5F1BQ06416 359 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 PAK1Q13153 545 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 CAPSQ13938 189 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 CENPPQ6IPU0 288 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 STXBP4Q6ZWJ1 553 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 TMEM161BQ8NDZ6 487 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 PRPF31Q8WWY3 499 aaKnown RBP17.8■□□□□ 0.44
SS18-211ENST00000578954 ZBTB10Q96DT7 871 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 GLT1D1Q96MS3 346 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 MED15Q96RN5 788 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 SEZ6LQ9BYH1 1024 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 SUGCTQ9HAC7 445 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 CBX8Q9HC52 389 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 KMT5AQ9NQR1 393 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 RWDD2AQ9UIY3 292 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 EVPLQ92817 2033 aa17.8■□□□□ 0.44
SS18-211ENST00000578954 CENPFP49454 3210 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 SIP14410 1827 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 A0A1W2PQ45 241 aaPredicted RBP17.79■□□□□ 0.44
SS18-211ENST00000578954 A0A1W2PQY0 241 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 K7ENM7 598 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 IKBKBO14920 756 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 GCNT3O95395 438 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 SGPL1O95470 568 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 CCNE1P24864 410 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 HOXD13P35453 343 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 LAMTOR4Q0VGL1 99 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 ITGA7Q13683 1181 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 NCAPHQ15003 741 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 ZCWPW2Q504Y3 356 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 CDCA2Q69YH5 1023 aaPredicted RBP17.79■□□□□ 0.44
SS18-211ENST00000578954 HAUS6Q7Z4H7 955 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 IFNLR1Q8IU57 520 aaPredicted RBP17.79■□□□□ 0.44
SS18-211ENST00000578954 DHX40Q8IX18 779 aaKnown RBP17.79■□□□□ 0.44
SS18-211ENST00000578954 KIAA0319LQ8IZA0 1049 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 METTL13Q8N6R0 699 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 ENOX1Q8TC92 643 aaKnown RBP17.79■□□□□ 0.44
SS18-211ENST00000578954 NFKBIZQ9BYH8 718 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 RBSNQ9H1K0 784 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 KCTD10Q9H3F6 313 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 PCDHB13Q9Y5F0 798 aa17.79■□□□□ 0.44
SS18-211ENST00000578954 SLC16A4O15374 487 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 TREHO43280 583 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 MYCNP04198 464 aaPredicted RBP17.78■□□□□ 0.44
SS18-211ENST00000578954 MNX1P50219 401 aaPredicted RBP17.78■□□□□ 0.44
SS18-211ENST00000578954 TFDP1Q14186 410 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 L1TD1Q5T7N2 865 aaKnown RBP17.78■□□□□ 0.44
SS18-211ENST00000578954 GDF6Q6KF10 455 aaPredicted RBP17.78■□□□□ 0.44
SS18-211ENST00000578954 TAF2Q6P1X5 1199 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 RPAINQ86UA6 219 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 ZNF710Q8N1W2 664 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 U2AF1L4Q8WU68 220 aaKnown RBP17.78■□□□□ 0.44
SS18-211ENST00000578954 NELFBQ8WX92 580 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 P2RX5Q93086 422 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 CTAGE1Q96RT6 745 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 MAP7D2Q96T17 732 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 SEMA6BQ9H3T3 888 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 TMEM134Q9H6X4 195 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 CTNND2Q9UQB3 1225 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 MAPK8IP1Q9UQF2 711 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 TRIP12Q14669 1992 aaPredicted RBP17.78■□□□□ 0.44
SS18-211ENST00000578954 ZMYM2Q9UBW7 1377 aa17.78■□□□□ 0.44
SS18-211ENST00000578954 PHLPP2Q6ZVD8 1323 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 A0A0U1RQG5 324 aaPredicted RBP17.77■□□□□ 0.44
SS18-211ENST00000578954 BICDL2A1A5D9 508 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 CCDC169A6NNP5 214 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 PRPF6O94906 941 aaKnown RBP17.77■□□□□ 0.44
SS18-211ENST00000578954 RPLP2P05387 115 aaKnown RBP17.77■□□□□ 0.44
SS18-211ENST00000578954 CYP2C9P11712 490 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 GJA8P48165 433 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 CHMP4BP1P59074 171 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 ZNF200P98182 395 aaPredicted RBP17.77■□□□□ 0.44
SS18-211ENST00000578954 CDC42EP1Q00587 391 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 MYL5Q02045 173 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 LRRC63Q05C16 580 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 GSE1Q14687 1217 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 KNOP1Q1ED39 458 aaKnown RBP17.77■□□□□ 0.44
SS18-211ENST00000578954 ZC2HC1CQ53FD0 456 aaPredicted RBP17.77■□□□□ 0.44
SS18-211ENST00000578954 KLHL10Q6JEL2 608 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 TTI2Q6NXR4 508 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 RUFY4Q6ZNE9 571 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 TAS1R3Q7RTX0 852 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 SERINC5Q86VE9 423 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 ZNF410Q86VK4 478 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 MAP4K3Q8IVH8 894 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 DEPTORQ8TB45 409 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 PPP1R13LQ8WUF5 828 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 KIFC3Q9BVG8 833 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 C2orf40Q9H1Z8 148 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms