RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 PNMA5Q96PV4 448 aa21.48■■□□□ 1.03
SS18-208ENST00000577751 USP28Q96RU2 1077 aa21.48■■□□□ 1.03
SS18-208ENST00000577751 BHMT2Q9H2M3 363 aa21.48■■□□□ 1.03
SS18-208ENST00000577751 RC3H2Q9HBD1 1191 aaKnown RBP21.48■■□□□ 1.03
SS18-208ENST00000577751 DNM3Q9UQ16 869 aa21.48■■□□□ 1.03
SS18-208ENST00000577751 DENND3A2RUS2 1198 aa21.47■■□□□ 1.03
SS18-208ENST00000577751 LINC01553A4QN01 128 aa21.47■■□□□ 1.03
SS18-208ENST00000577751 E9PMD0 336 aa21.47■■□□□ 1.03
SS18-208ENST00000577751 SLC26A4O43511 780 aa21.47■■□□□ 1.03
SS18-208ENST00000577751 EYA4O95677 639 aa21.47■■□□□ 1.03
SS18-208ENST00000577751 SFPQP23246 707 aaKnown RBP eCLIP21.47■■□□□ 1.03
SS18-208ENST00000577751 GLRA2P23416 452 aa21.47■■□□□ 1.03
SS18-208ENST00000577751 LONP1P36776 959 aaKnown RBP21.47■■□□□ 1.03
SS18-208ENST00000577751 KCNK18Q7Z418 384 aa21.47■■□□□ 1.03
SS18-208ENST00000577751 ASAP3Q8TDY4 903 aa21.47■■□□□ 1.03
SS18-208ENST00000577751 YME1L1Q96TA2 773 aa21.47■■□□□ 1.03
SS18-208ENST00000577751 MINDY3Q9H8M7 445 aa21.47■■□□□ 1.03
SS18-208ENST00000577751 CHST12Q9NRB3 414 aa21.47■■□□□ 1.03
SS18-208ENST00000577751 STAG3L1P0CL83 205 aa21.46■■□□□ 1.03
SS18-208ENST00000577751 ZSCAN22P10073 491 aaPredicted RBP21.46■■□□□ 1.03
SS18-208ENST00000577751 ZSCAN20P17040 1043 aaPredicted RBP21.46■■□□□ 1.03
SS18-208ENST00000577751 PTENP60484 403 aa21.46■■□□□ 1.03
SS18-208ENST00000577751 GRB10Q13322 594 aa21.46■■□□□ 1.03
SS18-208ENST00000577751 CAPSQ13938 189 aa21.46■■□□□ 1.03
SS18-208ENST00000577751 SPRED2Q7Z698 418 aa21.46■■□□□ 1.03
SS18-208ENST00000577751 NFKBIZQ9BYH8 718 aa21.46■■□□□ 1.03
SS18-208ENST00000577751 NT5C3AQ9H0P0 336 aa21.46■■□□□ 1.03
SS18-208ENST00000577751 POLR3FQ9H1D9 316 aaPredicted RBP21.46■■□□□ 1.03
SS18-208ENST00000577751 GPRC5CQ9NQ84 441 aa21.46■■□□□ 1.03
SS18-208ENST00000577751 FBXO2Q9UK22 296 aaPredicted RBP21.46■■□□□ 1.03
SS18-208ENST00000577751 STXBP5LQ9Y2K9 1186 aa21.46■■□□□ 1.03
SS18-208ENST00000577751 SRPRBQ9Y5M8 271 aaKnown RBP21.46■■□□□ 1.03
SS18-208ENST00000577751 NASPP49321 788 aaPredicted RBP21.45■■□□□ 1.02
SS18-208ENST00000577751 ERVK-21P61565 698 aa21.45■■□□□ 1.02
SS18-208ENST00000577751 PKP1Q13835 747 aa21.45■■□□□ 1.02
SS18-208ENST00000577751 TFDP1Q14186 410 aa21.45■■□□□ 1.02
SS18-208ENST00000577751 SLC39A14Q15043 492 aa21.45■■□□□ 1.02
SS18-208ENST00000577751 MAEAQ7L5Y9 396 aa21.45■■□□□ 1.02
SS18-208ENST00000577751 CABP7Q86V35 215 aa21.45■■□□□ 1.02
SS18-208ENST00000577751 MYLIPQ8WY64 445 aa21.45■■□□□ 1.02
SS18-208ENST00000577751 TRAIPQ9BWF2 469 aa21.45■■□□□ 1.02
SS18-208ENST00000577751 PRDM12Q9H4Q4 367 aa21.45■■□□□ 1.02
SS18-208ENST00000577751 ELAC1Q9H777 363 aaKnown RBP21.45■■□□□ 1.02
SS18-208ENST00000577751 RNF216Q9NWF9 866 aaPredicted RBP21.45■■□□□ 1.02
SS18-208ENST00000577751 MYO9BQ13459 2157 aa21.44■■□□□ 1.02
SS18-208ENST00000577751 CHD7Q9P2D1 2997 aa21.44■■□□□ 1.02
SS18-208ENST00000577751 F13A1P00488 732 aa21.44■■□□□ 1.02
SS18-208ENST00000577751 MARCKSP29966 332 aaPredicted RBP21.44■■□□□ 1.02
SS18-208ENST00000577751 PHKA2P46019 1235 aa21.44■■□□□ 1.02
SS18-208ENST00000577751 CEBPZQ03701 1054 aaKnown RBP21.44■■□□□ 1.02
SS18-208ENST00000577751 PCBP1Q15365 356 aaKnown RBP eCLIP21.44■■□□□ 1.02
SS18-208ENST00000577751 TMEM119Q4V9L6 283 aa21.44■■□□□ 1.02
SS18-208ENST00000577751 CATSPER4Q7RTX7 472 aa21.44■■□□□ 1.02
SS18-208ENST00000577751 TGS1Q96RS0 853 aaKnown RBP21.44■■□□□ 1.02
SS18-208ENST00000577751 AGPAT5Q9NUQ2 364 aa21.44■■□□□ 1.02
SS18-208ENST00000577751 TMEM161AQ9NX61 479 aa21.44■■□□□ 1.02
SS18-208ENST00000577751 DACT1Q9NYF0 836 aa21.44■■□□□ 1.02
SS18-208ENST00000577751 PCDHB7Q9Y5E2 793 aa21.44■■□□□ 1.02
SS18-208ENST00000577751 A0A0U1RQF3 1178 aa21.43■■□□□ 1.02
SS18-208ENST00000577751 UBA7P41226 1012 aa21.43■■□□□ 1.02
SS18-208ENST00000577751 FAM102BQ5T8I3 360 aa21.43■■□□□ 1.02
SS18-208ENST00000577751 CCSER1Q9C0I3 900 aa21.43■■□□□ 1.02
SS18-208ENST00000577751 CSRNP2Q9H175 543 aa21.43■■□□□ 1.02
SS18-208ENST00000577751 CERS4Q9HA82 394 aa21.43■■□□□ 1.02
SS18-208ENST00000577751 LRFN2Q9ULH4 789 aa21.43■■□□□ 1.02
SS18-208ENST00000577751 ADGRA3Q8IWK6 1321 aa21.43■■□□□ 1.02
SS18-208ENST00000577751 RALGAPA2Q2PPJ7 1873 aa21.43■■□□□ 1.02
SS18-208ENST00000577751 FNDC1Q4ZHG4 1894 aaPredicted RBP21.43■■□□□ 1.02
SS18-208ENST00000577751 EPOPA6NHQ4 379 aa21.42■■□□□ 1.02
SS18-208ENST00000577751 LINC00271P0C7V0 271 aa21.42■■□□□ 1.02
SS18-208ENST00000577751 HOXA11P31270 313 aaPredicted RBP21.42■■□□□ 1.02
SS18-208ENST00000577751 ZRSR1Q15695 479 aaKnown RBP21.42■■□□□ 1.02
SS18-208ENST00000577751 RINT1Q6NUQ1 792 aa21.42■■□□□ 1.02
SS18-208ENST00000577751 C1orf186Q6ZWK4 172 aa21.42■■□□□ 1.02
SS18-208ENST00000577751 NLRC5Q86WI3 1866 aa21.42■■□□□ 1.02
SS18-208ENST00000577751 ECHDC2Q86YB7 292 aa21.42■■□□□ 1.02
SS18-208ENST00000577751 CMTR2Q8IYT2 770 aaKnown RBP21.42■■□□□ 1.02
SS18-208ENST00000577751 SYT2Q8N9I0 419 aaPredicted RBP21.42■■□□□ 1.02
SS18-208ENST00000577751 LINC00301Q8NCQ3 95 aa21.42■■□□□ 1.02
SS18-208ENST00000577751 ARNTL2Q8WYA1 636 aa21.42■■□□□ 1.02
SS18-208ENST00000577751 BSNDQ8WZ55 320 aa21.42■■□□□ 1.02
SS18-208ENST00000577751 ZNF396Q96N95 335 aaPredicted RBP21.42■■□□□ 1.02
SS18-208ENST00000577751 PLIN2Q99541 437 aa21.42■■□□□ 1.02
SS18-208ENST00000577751 SLC12A3P55017 1021 aa21.41■■□□□ 1.02
SS18-208ENST00000577751 MBTD1Q05BQ5 628 aa21.41■■□□□ 1.02
SS18-208ENST00000577751 ADGRE1Q14246 886 aa21.41■■□□□ 1.02
SS18-208ENST00000577751 FOXD4L5Q5VV16 416 aaPredicted RBP21.41■■□□□ 1.02
SS18-208ENST00000577751 CDCA2Q69YH5 1023 aaPredicted RBP21.41■■□□□ 1.02
SS18-208ENST00000577751 FIBCD1Q8N539 461 aa21.41■■□□□ 1.02
SS18-208ENST00000577751 FOXD4L4Q8WXT5 416 aaPredicted RBP21.41■■□□□ 1.02
SS18-208ENST00000577751 KIFAP3Q92845 792 aa21.41■■□□□ 1.02
SS18-208ENST00000577751 CALML4Q96GE6 196 aa21.41■■□□□ 1.02
SS18-208ENST00000577751 CDK5RAP3Q96JB5 506 aa21.41■■□□□ 1.02
SS18-208ENST00000577751 SAMD11Q96NU1 681 aa21.41■■□□□ 1.02
SS18-208ENST00000577751 C17orf80Q9BSJ5 609 aa21.41■■□□□ 1.02
SS18-208ENST00000577751 TFIP11Q9UBB9 837 aaKnown RBP21.41■■□□□ 1.02
SS18-208ENST00000577751 PIN4Q9Y237 131 aaKnown RBP21.41■■□□□ 1.02
SS18-208ENST00000577751 RFXAPO00287 272 aa21.4■■□□□ 1.02
SS18-208ENST00000577751 EOMESO95936 686 aa21.4■■□□□ 1.02
SS18-208ENST00000577751 FOSL2P15408 326 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms