RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 VSIG10L2P0DP72 767 aa7.06□□□□□ -1.28
SMCHD1-202ENST00000577300 MAKP20794 623 aa7.06□□□□□ -1.28
SMCHD1-202ENST00000577300 CREB3L3Q68CJ9 461 aa7.06□□□□□ -1.28
SMCHD1-202ENST00000577300 KANSL1Q7Z3B3 1105 aa7.06□□□□□ -1.28
SMCHD1-202ENST00000577300 ELF4Q99607 663 aaPredicted RBP7.06□□□□□ -1.28
SMCHD1-202ENST00000577300 MMRN2Q9H8L6 949 aa7.06□□□□□ -1.28
SMCHD1-202ENST00000577300 KANSL2Q9H9L4 492 aa7.06□□□□□ -1.28
SMCHD1-202ENST00000577300 SPO11Q9Y5K1 396 aa7.06□□□□□ -1.28
SMCHD1-202ENST00000577300 GOLGA8BA8MQT2 603 aa7.05□□□□□ -1.28
SMCHD1-202ENST00000577300 PPP1R12AO14974 1030 aaPredicted RBP7.05□□□□□ -1.28
SMCHD1-202ENST00000577300 MAFGO15525 162 aa7.05□□□□□ -1.28
SMCHD1-202ENST00000577300 ADH4P08319 380 aa7.05□□□□□ -1.28
SMCHD1-202ENST00000577300 SLC9A1P19634 815 aa7.05□□□□□ -1.28
SMCHD1-202ENST00000577300 ESRP1Q6NXG1 681 aaKnown RBP7.05□□□□□ -1.28
SMCHD1-202ENST00000577300 PHYKPLQ8IUZ5 450 aa7.05□□□□□ -1.28
SMCHD1-202ENST00000577300 SYNPOQ8N3V7 929 aa7.05□□□□□ -1.28
SMCHD1-202ENST00000577300 NEU4Q8WWR8 484 aaPredicted RBP7.05□□□□□ -1.28
SMCHD1-202ENST00000577300 TCF25Q9BQ70 676 aa7.05□□□□□ -1.28
SMCHD1-202ENST00000577300 IL23AQ9NPF7 189 aa7.05□□□□□ -1.28
SMCHD1-202ENST00000577300 INTS7Q9NVH2 962 aaKnown RBP7.05□□□□□ -1.28
SMCHD1-202ENST00000577300 MAGEC2Q9UBF1 373 aaPredicted RBP7.05□□□□□ -1.28
SMCHD1-202ENST00000577300 A0A0A6YYJ9 748 aa7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 UBE2QL1A1L167 161 aa7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 DAPK3O43293 454 aa7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 TOX4O94842 621 aa7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 JUNP05412 331 aaKnown RBP7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 SCNN1GP51170 649 aa7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 INHBCP55103 352 aa7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 ADCY2Q08462 1091 aa7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 PABPC4Q13310 644 aaKnown RBP eCLIP7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 CFAP100Q494V2 611 aa7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 Q6ZRM9 215 aa7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 ZNF662Q6ZS27 426 aa7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 ZZZ3Q8IYH5 903 aa7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 DNAI1Q9UI46 699 aa7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 SYNPO2Q9UMS6 1093 aa7.04□□□□□ -1.28
SMCHD1-202ENST00000577300 ASMTLO95671 621 aa7.03□□□□□ -1.28
SMCHD1-202ENST00000577300 MAN2A2P49641 1150 aa7.03□□□□□ -1.28
SMCHD1-202ENST00000577300 ELAVL1Q15717 326 aaKnown RBP7.03□□□□□ -1.28
SMCHD1-202ENST00000577300 MFSD5Q6N075 450 aa7.03□□□□□ -1.28
SMCHD1-202ENST00000577300 TIGD7Q6NT04 549 aaPredicted RBP7.03□□□□□ -1.28
SMCHD1-202ENST00000577300 KIF18BQ86Y91 864 aa7.03□□□□□ -1.28
SMCHD1-202ENST00000577300 GSPT2Q8IYD1 628 aaKnown RBP7.03□□□□□ -1.28
SMCHD1-202ENST00000577300 C7orf31Q8N865 590 aa7.03□□□□□ -1.28
SMCHD1-202ENST00000577300 CEP89Q96ST8 783 aa7.03□□□□□ -1.28
SMCHD1-202ENST00000577300 OSBPL6Q9BZF3 934 aa7.03□□□□□ -1.28
SMCHD1-202ENST00000577300 ZSWIM4Q9H7M6 989 aa7.03□□□□□ -1.28
SMCHD1-202ENST00000577300 C14orf93Q9H972 538 aaKnown RBP7.03□□□□□ -1.28
SMCHD1-202ENST00000577300 OXSMQ9NWU1 459 aa7.03□□□□□ -1.28
SMCHD1-202ENST00000577300 RCAN3Q9UKA8 241 aa7.03□□□□□ -1.28
SMCHD1-202ENST00000577300 MTSS1O43312 755 aa7.02□□□□□ -1.29
SMCHD1-202ENST00000577300 PRPF6O94906 941 aaKnown RBP7.02□□□□□ -1.29
SMCHD1-202ENST00000577300 CNGB1Q14028 1251 aaPredicted RBP7.02□□□□□ -1.29
SMCHD1-202ENST00000577300 FKBP15Q5T1M5 1219 aa7.02□□□□□ -1.29
SMCHD1-202ENST00000577300 KRT40Q6A162 431 aa7.02□□□□□ -1.29
SMCHD1-202ENST00000577300 KIAA1841Q6NSI8 718 aa7.02□□□□□ -1.29
SMCHD1-202ENST00000577300 HTR3DQ70Z44 454 aa7.02□□□□□ -1.29
SMCHD1-202ENST00000577300 LARP4BQ92615 738 aaKnown RBP7.02□□□□□ -1.29
SMCHD1-202ENST00000577300 IKZF4Q9H2S9 585 aa7.02□□□□□ -1.29
SMCHD1-202ENST00000577300 HNRNPLP14866 589 aaKnown RBP eCLIP7.01□□□□□ -1.29
SMCHD1-202ENST00000577300 ATP2A2P16615 1042 aaKnown RBP7.01□□□□□ -1.29
SMCHD1-202ENST00000577300 KIR2DL3P43628 341 aa7.01□□□□□ -1.29
SMCHD1-202ENST00000577300 SMAD3P84022 425 aaKnown RBP7.01□□□□□ -1.29
SMCHD1-202ENST00000577300 SLC25A3Q00325 362 aa7.01□□□□□ -1.29
SMCHD1-202ENST00000577300 TOB2Q14106 344 aaPredicted RBP7.01□□□□□ -1.29
SMCHD1-202ENST00000577300 MAN2A1Q16706 1144 aa7.01□□□□□ -1.29
SMCHD1-202ENST00000577300 LDLRAD3Q86YD5 345 aa7.01□□□□□ -1.29
SMCHD1-202ENST00000577300 CMTM4Q8IZR5 234 aa7.01□□□□□ -1.29
SMCHD1-202ENST00000577300 MYL10Q9BUA6 226 aa7.01□□□□□ -1.29
SMCHD1-202ENST00000577300 MTG2Q9H4K7 406 aa7.01□□□□□ -1.29
SMCHD1-202ENST00000577300 TOMM22Q9NS69 142 aa7.01□□□□□ -1.29
SMCHD1-202ENST00000577300 ZKSCAN5Q9Y2L8 839 aa7.01□□□□□ -1.29
SMCHD1-202ENST00000577300 XDHP47989 1333 aa7.01□□□□□ -1.29
SMCHD1-202ENST00000577300 OPHN1O60890 802 aa7□□□□□ -1.29
SMCHD1-202ENST00000577300 RABGGTBP53611 331 aa7□□□□□ -1.29
SMCHD1-202ENST00000577300 INHBEP58166 350 aa7□□□□□ -1.29
SMCHD1-202ENST00000577300 SMN1Q16637 294 aaKnown RBP7□□□□□ -1.29
SMCHD1-202ENST00000577300 KRTAP5-3Q6L8H2 238 aa7□□□□□ -1.29
SMCHD1-202ENST00000577300 RTF1Q92541 710 aaKnown RBP7□□□□□ -1.29
SMCHD1-202ENST00000577300 CLIP3Q96DZ5 547 aa7□□□□□ -1.29
SMCHD1-202ENST00000577300 GPR87Q9BY21 358 aa7□□□□□ -1.29
SMCHD1-202ENST00000577300 ZMAT4Q9H898 229 aa7□□□□□ -1.29
SMCHD1-202ENST00000577300 SLC2A4RGQ9NR83 387 aa7□□□□□ -1.29
SMCHD1-202ENST00000577300 C11orf21Q9P2W6 132 aa7□□□□□ -1.29
SMCHD1-202ENST00000577300 REXO2Q9Y3B8 237 aaKnown RBP7□□□□□ -1.29
SMCHD1-202ENST00000577300 A0A087X1B8 175 aa6.99□□□□□ -1.29
SMCHD1-202ENST00000577300 A0A0A6YYK5 440 aaPredicted RBP6.99□□□□□ -1.29
SMCHD1-202ENST00000577300 KLRG2A4D1S0 409 aaPredicted RBP6.99□□□□□ -1.29
SMCHD1-202ENST00000577300 MFAP3LO75121 409 aa6.99□□□□□ -1.29
SMCHD1-202ENST00000577300 FSBPO95073 299 aa6.99□□□□□ -1.29
SMCHD1-202ENST00000577300 F2P00734 622 aa6.99□□□□□ -1.29
SMCHD1-202ENST00000577300 POU3F2P20265 443 aaPredicted RBP6.99□□□□□ -1.29
SMCHD1-202ENST00000577300 SPIDRQ14159 915 aa6.99□□□□□ -1.29
SMCHD1-202ENST00000577300 LRRC32Q14392 662 aa6.99□□□□□ -1.29
SMCHD1-202ENST00000577300 TCEA2Q15560 299 aa6.99□□□□□ -1.29
SMCHD1-202ENST00000577300 UNQ6494/PRO21346Q6UXR6 183 aa6.99□□□□□ -1.29
SMCHD1-202ENST00000577300 ULK2Q8IYT8 1036 aa6.99□□□□□ -1.29
SMCHD1-202ENST00000577300 EFHBQ8N7U6 833 aa6.99□□□□□ -1.29
SMCHD1-202ENST00000577300 PPP1R14CQ8TAE6 165 aa6.99□□□□□ -1.29
SMCHD1-202ENST00000577300 HIST1H2AHQ96KK5 128 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms