RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 MIPEPQ99797 713 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 EIF2AK1Q9BQI3 630 aaKnown RBP6.9□□□□□ -1.3
VPS53-219ENST00000576019 ATXN3LQ9H3M9 355 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 IPPKQ9H8X2 491 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 SSU72Q9NP77 194 aaKnown RBP6.9□□□□□ -1.3
VPS53-219ENST00000576019 POLHQ9Y253 713 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 NOC2LQ9Y3T9 749 aaKnown RBP6.9□□□□□ -1.3
VPS53-219ENST00000576019 PCDHA11Q9Y5I1 949 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 ADGRF5Q8IZF2 1346 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 ZNF541Q9H0D2 1346 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 CFAP47Q6ZTR5 3102 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 MAP2P11137 1827 aaKnown RBP6.9□□□□□ -1.31
VPS53-219ENST00000576019 TRANK1O15050 2925 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 ELOA3CA0A087WX78 387 aaPredicted RBP6.89□□□□□ -1.31
VPS53-219ENST00000576019 ELOA3DA6NLF2 546 aaPredicted RBP6.89□□□□□ -1.31
VPS53-219ENST00000576019 SLC9A1P19634 815 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 ST5P78524 1137 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 ELOA3BQ3SY89 546 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 ATAT1Q5SQI0 421 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 DUSP27Q5VZP5 1158 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 FAM109BQ6ICB4 259 aaPredicted RBP6.89□□□□□ -1.31
VPS53-219ENST00000576019 FOXR1Q6PIV2 292 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 TTLL7Q6ZT98 887 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 CDH24Q86UP0 819 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 ARHGEF25Q86VW2 580 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 RASSF3Q86WH2 238 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 PTRH1Q86Y79 214 aaKnown RBP6.89□□□□□ -1.31
VPS53-219ENST00000576019 STK11IPQ8N1F8 1099 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 CAMKK1Q8N5S9 505 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 LINC00116Q8NCU8 138 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 ELOA3Q8NG57 546 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 COPS5Q92905 334 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 MAP3K14Q99558 947 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 ASPNQ9BXN1 380 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 TAOK3Q9H2K8 898 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 KCNK4Q9NYG8 393 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 RTEL1Q9NZ71 1219 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.89□□□□□ -1.31
VPS53-219ENST00000576019 STARD13Q9Y3M8 1113 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 NPFFR2Q9Y5X5 522 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 ST14Q9Y5Y6 855 aa6.89□□□□□ -1.31
VPS53-219ENST00000576019 KIF7Q2M1P5 1343 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 KRBA1A5PL33 1030 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 RASA4BC9J798 803 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 H7C1D1 291 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 TCERG1O14776 1098 aaKnown RBP6.88□□□□□ -1.31
VPS53-219ENST00000576019 RASA4O43374 803 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 RHOBTB3O94955 611 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 ALBP02768 609 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 TNFAIP3P21580 790 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 C5AR1P21730 350 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 LTBRP36941 435 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 MAPK9P45984 424 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 CCT5P48643 541 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 HUNKP57058 714 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 DDR1Q08345 913 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 SEMA5AQ13591 1074 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 PDCD1Q15116 288 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 PDCD2Q16342 344 aaPredicted RBP6.88□□□□□ -1.31
VPS53-219ENST00000576019 LCE2AQ5TA79 106 aaPredicted RBP6.88□□□□□ -1.31
VPS53-219ENST00000576019 RGMBQ6NW40 437 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 MAATS1Q7Z4T9 603 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 TMC3Q7Z5M5 1100 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 FBXW5Q969U6 566 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 BHMT2Q9H2M3 363 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 PIDD1Q9HB75 910 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 DNAJC28Q9NX36 388 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 PPARGC1AQ9UBK2 798 aaKnown RBP6.88□□□□□ -1.31
VPS53-219ENST00000576019 CBLCQ9ULV8 474 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 RNF112Q9ULX5 631 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 NR2E3Q9Y5X4 410 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 BACE2Q9Y5Z0 518 aa6.88□□□□□ -1.31
VPS53-219ENST00000576019 hCG_1642624A0A1W2PR95 340 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 FAM227AF5H4B4 570 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 KDM1AO60341 852 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 LRRN2O75325 713 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 LRIG2O94898 1065 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 HRGP04196 525 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 ADH5P11766 374 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 OSMP13725 252 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 LSP1P33241 339 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 BMP8BP34820 402 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 FAM193AP78312 1265 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 SRSF2Q01130 221 aaKnown RBP6.87□□□□□ -1.31
VPS53-219ENST00000576019 IFIT5Q13325 482 aaKnown RBP6.87□□□□□ -1.31
VPS53-219ENST00000576019 KIZQ2M2Z5 673 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 EXOSC6Q5RKV6 272 aaKnown RBP6.87□□□□□ -1.31
VPS53-219ENST00000576019 LETMD1Q6P1Q0 360 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 TREML4Q6UXN2 200 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 CCDC89Q8N998 374 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 MFSD2AQ8NA29 543 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 SPATA5Q8NB90 893 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 DEPTORQ8TB45 409 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 RNF141Q8WVD5 230 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 RIPOR3Q96MK2 946 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 WDR12Q9GZL7 423 aaKnown RBP6.87□□□□□ -1.31
VPS53-219ENST00000576019 PDLIM7Q9NR12 457 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 TOMM22Q9NS69 142 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 CLEC1BQ9P126 229 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 STAP2Q9UGK3 403 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms