RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 POLR3FQ9H1D9 316 aaPredicted RBP10.6□□□□□ -0.71
CCDC40-214ENST00000575431 C2orf40Q9H1Z8 148 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 AGO3Q9H9G7 860 aaKnown RBP10.6□□□□□ -0.71
CCDC40-214ENST00000575431 CDHR5Q9HBB8 845 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 IFT122Q9HBG6 1241 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 ERVK-5Q9HDB9 667 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 CHST12Q9NRB3 414 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 C1orf112Q9NSG2 853 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 BMP2KQ9NSY1 1161 aaPredicted RBP10.6□□□□□ -0.71
CCDC40-214ENST00000575431 BLOC1S4Q9NUP1 217 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 ODF2LQ9ULJ1 636 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 NOC2LQ9Y3T9 749 aaKnown RBP10.6□□□□□ -0.71
CCDC40-214ENST00000575431 SSBP05455 408 aaKnown RBP eCLIP10.59□□□□□ -0.71
CCDC40-214ENST00000575431 SRGAP2CP0DJJ0 459 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 SCP2P22307 547 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 GLRA2P23416 452 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 CD52P31358 61 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 SLC12A3P55017 1021 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 PTENP60484 403 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 WDR5P61964 334 aaKnown RBP10.59□□□□□ -0.71
CCDC40-214ENST00000575431 AMPD3Q01432 767 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 HABP4Q5JVS0 413 aaKnown RBP10.59□□□□□ -0.71
CCDC40-214ENST00000575431 SPECC1Q5M775 1068 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 SHC4Q6S5L8 630 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 SV2BQ7L1I2 683 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 MAEAQ7L5Y9 396 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 ZBTB8OSQ8IWT0 167 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 TMEM40Q8WWA1 233 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 IPO9Q96P70 1041 aaKnown RBP10.59□□□□□ -0.71
CCDC40-214ENST00000575431 PPP1R16BQ96T49 567 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 MAGEF1Q9HAY2 307 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 DACT1Q9NYF0 836 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 LARSQ9P2J5 1176 aaKnown RBP10.59□□□□□ -0.71
CCDC40-214ENST00000575431 ST3GAL5Q9UNP4 418 aa10.59□□□□□ -0.71
CCDC40-214ENST00000575431 A0A1W2PQ27 194 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 A0A1W2PQ64 194 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 A0A1W2PQD8 194 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 DENND3A2RUS2 1198 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 H0YCG3 227 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 ENPP3O14638 875 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 ERLIN2O94905 339 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 KRT18P05783 430 aaKnown RBP10.58□□□□□ -0.72
CCDC40-214ENST00000575431 STAG3L1P0CL83 205 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 SKIP12755 728 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 ATP2A2P16615 1042 aaKnown RBP10.58□□□□□ -0.72
CCDC40-214ENST00000575431 CMA1P23946 247 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 AXLP30530 894 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 ABCD1P33897 745 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 EFNA5P52803 228 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 SMTNP53814 917 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 SMAD3P84022 425 aaKnown RBP10.58□□□□□ -0.72
CCDC40-214ENST00000575431 CAPSQ13938 189 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 RAB30Q15771 203 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 RESP18Q5W5W9 173 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 FAM228AQ86W67 206 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 GPBP1Q86WP2 473 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 KSR1Q8IVT5 923 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 DEPTORQ8TB45 409 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 PRIMPOLQ96LW4 560 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 NTPCRQ9BSD7 190 aaKnown RBP10.58□□□□□ -0.72
CCDC40-214ENST00000575431 RUSC1Q9BVN2 902 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 TSPYL2Q9H2G4 693 aaPredicted RBP10.58□□□□□ -0.72
CCDC40-214ENST00000575431 TNMDQ9H2S6 317 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 TSHZ2Q9NRE2 1034 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 RGS18Q9NS28 235 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 CXXC1Q9P0U4 656 aaPredicted RBP10.58□□□□□ -0.72
CCDC40-214ENST00000575431 PCDH10Q9P2E7 1040 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 USP25Q9UHP3 1055 aa10.58□□□□□ -0.72
CCDC40-214ENST00000575431 TET1Q8NFU7 2136 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 GOLGA6L4A6NEF3 574 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 LRRIQ4A6NIV6 560 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 INO80B-WBP1J3KQ70 363 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 HIP1RO75146 1068 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 DMP1Q13316 513 aaPredicted RBP10.57□□□□□ -0.72
CCDC40-214ENST00000575431 MCM6Q14566 821 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 CDCA2Q69YH5 1023 aaPredicted RBP10.57□□□□□ -0.72
CCDC40-214ENST00000575431 GPR153Q6NV75 609 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 SLC24A5Q71RS6 500 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 CATSPER4Q7RTX7 472 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 HERC6Q8IVU3 1022 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 PDILTQ8N807 584 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 SLC17A8Q8NDX2 589 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 ASAP3Q8TDY4 903 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 SPIRE2Q8WWL2 714 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 RSPH1Q8WYR4 309 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 TOP1MTQ969P6 601 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 CCDC51Q96ER9 411 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 CCDC34Q96HJ3 373 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 TRAIPQ9BWF2 469 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 OSBPL7Q9BZF2 842 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 ELAC1Q9H777 363 aaKnown RBP10.57□□□□□ -0.72
CCDC40-214ENST00000575431 GPRC5CQ9NQ84 441 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 AGPAT5Q9NUQ2 364 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 PRMT7Q9NVM4 692 aaPredicted RBP10.57□□□□□ -0.72
CCDC40-214ENST00000575431 KCNH3Q9ULD8 1083 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 MICAL3Q7RTP6 2002 aa10.57□□□□□ -0.72
CCDC40-214ENST00000575431 TCHHQ07283 1943 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 FAM237AA0A1B0GTK4 181 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.56□□□□□ -0.72
CCDC40-214ENST00000575431 K7ERI5 159 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms