RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 HELQQ8TDG4 1101 aa23.72■■□□□ 1.39
VPS53-216ENST00000574029 PBXIP1Q96AQ6 731 aa23.72■■□□□ 1.39
VPS53-216ENST00000574029 MBOAT7Q96N66 472 aa23.72■■□□□ 1.39
VPS53-216ENST00000574029 GCOM2Q9BZD3 368 aaPredicted RBP23.72■■□□□ 1.39
VPS53-216ENST00000574029 ZSWIM6Q9HCJ5 1215 aa23.72■■□□□ 1.39
VPS53-216ENST00000574029 CHST12Q9NRB3 414 aa23.72■■□□□ 1.39
VPS53-216ENST00000574029 SEPT9Q9UHD8 586 aaPredicted RBP23.72■■□□□ 1.39
VPS53-216ENST00000574029 CSDE1O75534 798 aaKnown RBP23.71■■□□□ 1.39
VPS53-216ENST00000574029 HOXB8P17481 243 aaPredicted RBP23.71■■□□□ 1.39
VPS53-216ENST00000574029 LLGL2Q6P1M3 1020 aa23.71■■□□□ 1.39
VPS53-216ENST00000574029 MRPL43Q8N983 215 aaKnown RBP23.71■■□□□ 1.39
VPS53-216ENST00000574029 DAGLBQ8NCG7 672 aa23.71■■□□□ 1.39
VPS53-216ENST00000574029 TRAIPQ9BWF2 469 aa23.71■■□□□ 1.39
VPS53-216ENST00000574029 MRPL9Q9BYD2 267 aaKnown RBP23.71■■□□□ 1.39
VPS53-216ENST00000574029 TMEM150BA6NC51 233 aa23.7■■□□□ 1.38
VPS53-216ENST00000574029 DEXIO95424 95 aa23.7■■□□□ 1.38
VPS53-216ENST00000574029 SMC1AQ14683 1233 aaKnown RBP23.7■■□□□ 1.38
VPS53-216ENST00000574029 MOXD1Q6UVY6 613 aa23.7■■□□□ 1.38
VPS53-216ENST00000574029 BLIDQ8IZY5 108 aa23.7■■□□□ 1.38
VPS53-216ENST00000574029 ETNPPLQ8TBG4 499 aa23.7■■□□□ 1.38
VPS53-216ENST00000574029 KMT2EQ8IZD2 1858 aa23.7■■□□□ 1.38
VPS53-216ENST00000574029 TRIOO75962 3097 aa23.69■■□□□ 1.38
VPS53-216ENST00000574029 C2orf71A6NGG8 1288 aa23.69■■□□□ 1.38
VPS53-216ENST00000574029 EPB41L2O43491 1005 aaKnown RBP23.69■■□□□ 1.38
VPS53-216ENST00000574029 BCAR1P56945 870 aa23.69■■□□□ 1.38
VPS53-216ENST00000574029 SIGLEC14Q08ET2 396 aa23.69■■□□□ 1.38
VPS53-216ENST00000574029 NPY5RQ15761 445 aa23.69■■□□□ 1.38
VPS53-216ENST00000574029 FAM177A1Q8N128 213 aaPredicted RBP23.69■■□□□ 1.38
VPS53-216ENST00000574029 RSPH1Q8WYR4 309 aa23.69■■□□□ 1.38
VPS53-216ENST00000574029 CASP10Q92851 521 aa23.69■■□□□ 1.38
VPS53-216ENST00000574029 ZNF274Q96GC6 653 aaPredicted RBP23.69■■□□□ 1.38
VPS53-216ENST00000574029 APOL5Q9BWW9 433 aa23.69■■□□□ 1.38
VPS53-216ENST00000574029 A0A087WZ62 844 aa23.68■■□□□ 1.38
VPS53-216ENST00000574029 MAFO75444 373 aaPredicted RBP23.68■■□□□ 1.38
VPS53-216ENST00000574029 SFPQP23246 707 aaKnown RBP eCLIP23.68■■□□□ 1.38
VPS53-216ENST00000574029 PHKA2P46019 1235 aa23.68■■□□□ 1.38
VPS53-216ENST00000574029 DNM2P50570 870 aa23.68■■□□□ 1.38
VPS53-216ENST00000574029 GALNT17Q6IS24 598 aa23.68■■□□□ 1.38
VPS53-216ENST00000574029 ZNF410Q86VK4 478 aa23.68■■□□□ 1.38
VPS53-216ENST00000574029 SH2D3AQ9BRG2 576 aa23.68■■□□□ 1.38
VPS53-216ENST00000574029 FDXACB1Q9BRP7 624 aaPredicted RBP23.68■■□□□ 1.38
VPS53-216ENST00000574029 HCFC2Q9Y5Z7 792 aa23.68■■□□□ 1.38
VPS53-216ENST00000574029 ALDH7A1P49419 539 aaKnown RBP23.67■■□□□ 1.38
VPS53-216ENST00000574029 PTPN21Q16825 1174 aa23.67■■□□□ 1.38
VPS53-216ENST00000574029 FBXL6Q8N531 539 aa23.67■■□□□ 1.38
VPS53-216ENST00000574029 PRSS33Q8NF86 280 aa23.67■■□□□ 1.38
VPS53-216ENST00000574029 ASIC4Q96FT7 647 aa23.67■■□□□ 1.38
VPS53-216ENST00000574029 INO80BQ9C086 356 aaPredicted RBP23.67■■□□□ 1.38
VPS53-216ENST00000574029 SUCLA2Q9P2R7 463 aaPredicted RBP23.67■■□□□ 1.38
VPS53-216ENST00000574029 CYP46A1Q9Y6A2 500 aa23.67■■□□□ 1.38
VPS53-216ENST00000574029 DDX11L8A8MPP1 907 aa23.66■■□□□ 1.38
VPS53-216ENST00000574029 NT5C1B-RDH14C9J2C7 533 aa23.66■■□□□ 1.38
VPS53-216ENST00000574029 CPLX1O14810 134 aa23.66■■□□□ 1.38
VPS53-216ENST00000574029 CLASP2O75122 1294 aaKnown RBP23.66■■□□□ 1.38
VPS53-216ENST00000574029 NEFLP07196 543 aa23.66■■□□□ 1.38
VPS53-216ENST00000574029 SKIP12755 728 aa23.66■■□□□ 1.38
VPS53-216ENST00000574029 PSMC5P62195 406 aa23.66■■□□□ 1.38
VPS53-216ENST00000574029 NONOQ15233 471 aaKnown RBP eCLIP23.66■■□□□ 1.38
VPS53-216ENST00000574029 TPRNQ4KMQ1 711 aa23.66■■□□□ 1.38
VPS53-216ENST00000574029 IER5LQ5T953 404 aa23.66■■□□□ 1.38
VPS53-216ENST00000574029 ANO5Q75V66 913 aa23.66■■□□□ 1.38
VPS53-216ENST00000574029 RHPN2Q8IUC4 686 aa23.66■■□□□ 1.38
VPS53-216ENST00000574029 SUGP1Q8IWZ8 645 aaKnown RBP23.66■■□□□ 1.38
VPS53-216ENST00000574029 AIFM3Q96NN9 605 aa23.66■■□□□ 1.38
VPS53-216ENST00000574029 ADAM7Q9H2U9 754 aa23.66■■□□□ 1.38
VPS53-216ENST00000574029 DDX25Q9UHL0 483 aaKnown RBP23.66■■□□□ 1.38
VPS53-216ENST00000574029 WDFY4Q6ZS81 3184 aa23.65■■□□□ 1.38
VPS53-216ENST00000574029 ITIH3Q06033 890 aa23.65■■□□□ 1.38
VPS53-216ENST00000574029 TWF2Q6IBS0 349 aaKnown RBP23.65■■□□□ 1.38
VPS53-216ENST00000574029 KRT25Q7Z3Z0 450 aa23.65■■□□□ 1.38
VPS53-216ENST00000574029 TMEM169Q96HH4 297 aa23.65■■□□□ 1.38
VPS53-216ENST00000574029 PRRX2Q99811 253 aa23.65■■□□□ 1.38
VPS53-216ENST00000574029 TM6SF1Q9BZW5 370 aa23.65■■□□□ 1.38
VPS53-216ENST00000574029 CDH22Q9UJ99 828 aa23.65■■□□□ 1.38
VPS53-216ENST00000574029 PIEZO1Q92508 2521 aa23.65■■□□□ 1.38
VPS53-216ENST00000574029 CARNS1A5YM72 827 aa23.64■■□□□ 1.37
VPS53-216ENST00000574029 SLC37A4O43826 429 aa23.64■■□□□ 1.37
VPS53-216ENST00000574029 ZNF623O75123 536 aa23.64■■□□□ 1.37
VPS53-216ENST00000574029 CXCL14O95715 111 aa23.64■■□□□ 1.37
VPS53-216ENST00000574029 BMS1Q14692 1282 aaKnown RBP23.64■■□□□ 1.37
VPS53-216ENST00000574029 INF2Q27J81 1249 aa23.64■■□□□ 1.37
VPS53-216ENST00000574029 CES5AQ6NT32 575 aa23.64■■□□□ 1.37
VPS53-216ENST00000574029 CPLX2Q6PUV4 134 aaKnown RBP23.64■■□□□ 1.37
VPS53-216ENST00000574029 TMEM173Q86WV6 379 aaPredicted RBP23.64■■□□□ 1.37
VPS53-216ENST00000574029 KSR1Q8IVT5 923 aa23.64■■□□□ 1.37
VPS53-216ENST00000574029 LPPQ93052 612 aa23.64■■□□□ 1.37
VPS53-216ENST00000574029 NECTIN4Q96NY8 510 aa23.64■■□□□ 1.37
VPS53-216ENST00000574029 JPH2Q9BR39 696 aaPredicted RBP23.64■■□□□ 1.37
VPS53-216ENST00000574029 LARP6Q9BRS8 491 aaKnown RBP23.64■■□□□ 1.37
VPS53-216ENST00000574029 ZBP1Q9H171 429 aa23.64■■□□□ 1.37
VPS53-216ENST00000574029 FAM105AQ9NUU6 356 aa23.64■■□□□ 1.37
VPS53-216ENST00000574029 PIN4Q9Y237 131 aaKnown RBP23.64■■□□□ 1.37
VPS53-216ENST00000574029 NR2E1Q9Y466 385 aa23.64■■□□□ 1.37
VPS53-216ENST00000574029 EML1O00423 815 aa23.63■■□□□ 1.37
VPS53-216ENST00000574029 ZC3H11AO75152 810 aaKnown RBP eCLIP23.63■■□□□ 1.37
VPS53-216ENST00000574029 RAB27AP51159 221 aa23.63■■□□□ 1.37
VPS53-216ENST00000574029 PTPN5P54829 565 aa23.63■■□□□ 1.37
VPS53-216ENST00000574029 PPP2R5CQ13362 524 aa23.63■■□□□ 1.37
VPS53-216ENST00000574029 PLA2G4FQ68DD2 849 aa23.63■■□□□ 1.37
VPS53-216ENST00000574029 GLB1LQ6UWU2 654 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms