RNA–Protein interactions for RNA: ENST00000570139.1

CNOT1-222, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 2

Gene CNOT1, Length 458 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-222ENST00000570139 IPPKQ9H8X2 491 aa8.41□□□□□ -1.06
CNOT1-222ENST00000570139 CATSPERZQ9NTU4 200 aa8.41□□□□□ -1.06
CNOT1-222ENST00000570139 ZBTB21Q9ULJ3 1066 aa8.41□□□□□ -1.06
CNOT1-222ENST00000570139 AOX1Q06278 1338 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 ARNTLO00327 626 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 PLSCR1O15162 318 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 DYNC1LI2O43237 492 aaPredicted RBP8.4□□□□□ -1.06
CNOT1-222ENST00000570139 XPOTO43592 962 aaKnown RBP8.4□□□□□ -1.06
CNOT1-222ENST00000570139 SH3BP5O60239 455 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 RPS6KA4O75676 772 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 IL33O95760 270 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 PCCAP05165 728 aaPredicted RBP8.4□□□□□ -1.06
CNOT1-222ENST00000570139 LCP1P13796 627 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 HSPA6P17066 643 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 LPOP22079 712 aaPredicted RBP8.4□□□□□ -1.06
CNOT1-222ENST00000570139 TPP2P29144 1249 aaPredicted RBP8.4□□□□□ -1.06
CNOT1-222ENST00000570139 LSP1P33241 339 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 PIP4K2AP48426 406 aaPredicted RBP8.4□□□□□ -1.06
CNOT1-222ENST00000570139 PHC1P78364 1004 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 SAFBQ15424 915 aaKnown RBP eCLIP8.4□□□□□ -1.06
CNOT1-222ENST00000570139 ZNF174Q15697 407 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 SGO2Q562F6 1265 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 ANKRD45Q5TZF3 282 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 PPP1R42Q7Z4L9 355 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 C11orf96Q7Z7L8 435 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 RASSF3Q86WH2 238 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 NEDD1Q8NHV4 660 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 FAM46AQ96IP4 442 aaKnown RBP8.4□□□□□ -1.06
CNOT1-222ENST00000570139 PLA2G12BQ9BX93 195 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 GPR62Q9BZJ7 368 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 NMRK2Q9NPI5 230 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 MAN1C1Q9NR34 630 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 PCDHA2Q9Y5H9 948 aa8.4□□□□□ -1.06
CNOT1-222ENST00000570139 UBR3Q6ZT12 1888 aa8.4□□□□□ -1.07
CNOT1-222ENST00000570139 FAM95CA0A1B0GW59 222 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 SHISA3A0PJX4 238 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 KLHL33A6NCF5 533 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 ZNF865P0CJ78 1059 aaPredicted RBP8.39□□□□□ -1.07
CNOT1-222ENST00000570139 RGS3P49796 1198 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 LACTBP83111 547 aaPredicted RBP8.39□□□□□ -1.07
CNOT1-222ENST00000570139 C10orf62Q5T681 223 aaPredicted RBP8.39□□□□□ -1.07
CNOT1-222ENST00000570139 GPR158Q5T848 1215 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 CREB3L3Q68CJ9 461 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 UBE3BQ7Z3V4 1068 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 ZNF34Q8IZ26 560 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 MFSD4AQ8N468 514 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 LINC00116Q8NCU8 138 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 KIF1BPQ96EK5 621 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 TCTN2Q96GX1 697 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 SUCLG2Q96I99 432 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 TRIT1Q9H3H1 467 aaKnown RBP8.39□□□□□ -1.07
CNOT1-222ENST00000570139 BICC1Q9H694 974 aaKnown RBP8.39□□□□□ -1.07
CNOT1-222ENST00000570139 NOP53Q9NZM5 478 aaKnown RBP8.39□□□□□ -1.07
CNOT1-222ENST00000570139 INVSQ9Y283 1065 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 SPO11Q9Y5K1 396 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 QSER1Q2KHR3 1735 aa8.39□□□□□ -1.07
CNOT1-222ENST00000570139 FRMPD2Q68DX3 1309 aaPredicted RBP8.38□□□□□ -1.07
CNOT1-222ENST00000570139 PNMA6EA0A0J9YXQ4 647 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 SLC12A8A0AV02 714 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 CAMTA2O94983 1202 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 ZNF205O95201 554 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 ASGR2P07307 311 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 GSTM1P09488 218 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 PAX3P23760 479 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 PCBP3P57721 371 aaKnown RBP8.38□□□□□ -1.07
CNOT1-222ENST00000570139 LSAMPQ13449 338 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 LRRC32Q14392 662 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 TERF2Q15554 542 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 BMP2KLQ5H9B9 411 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 IL31Q6EBC2 164 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 PAOXQ6QHF9 649 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 LYPD4Q6UWN0 246 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 NLRP10Q86W26 655 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 E2F7Q96AV8 911 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 C1GALT1Q9NS00 363 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 C1orf112Q9NSG2 853 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 H2AFY2Q9P0M6 372 aaPredicted RBP8.38□□□□□ -1.07
CNOT1-222ENST00000570139 NARFQ9UHQ1 456 aa8.38□□□□□ -1.07
CNOT1-222ENST00000570139 NOC2LQ9Y3T9 749 aaKnown RBP8.38□□□□□ -1.07
CNOT1-222ENST00000570139 RIC1Q4ADV7 1423 aa8.37□□□□□ -1.07
CNOT1-222ENST00000570139 DDX60Q8IY21 1712 aaKnown RBP8.37□□□□□ -1.07
CNOT1-222ENST00000570139 RTL9Q8NET4 1388 aa8.37□□□□□ -1.07
CNOT1-222ENST00000570139 LRP5O75197 1615 aa8.37□□□□□ -1.07
CNOT1-222ENST00000570139 SH3TC1Q8TE82 1336 aa8.37□□□□□ -1.07
CNOT1-222ENST00000570139 FAM229AH3BQW9 127 aa8.37□□□□□ -1.07
CNOT1-222ENST00000570139 IGF2BP3O00425 579 aaKnown RBP eCLIP8.37□□□□□ -1.07
CNOT1-222ENST00000570139 TGM5O43548 720 aa8.37□□□□□ -1.07
CNOT1-222ENST00000570139 SURF6O75683 361 aaKnown RBP8.37□□□□□ -1.07
CNOT1-222ENST00000570139 ALX3O95076 343 aa8.37□□□□□ -1.07
CNOT1-222ENST00000570139 YBX3P16989 372 aaKnown RBP eCLIP8.37□□□□□ -1.07
CNOT1-222ENST00000570139 MAP4P27816 1152 aaKnown RBP8.37□□□□□ -1.07
CNOT1-222ENST00000570139 HTR3AP46098 478 aa8.37□□□□□ -1.07
CNOT1-222ENST00000570139 NEK3P51956 506 aa8.37□□□□□ -1.07
CNOT1-222ENST00000570139 SCAND1P57086 179 aa8.37□□□□□ -1.07
CNOT1-222ENST00000570139 TNK2Q07912 1038 aa8.37□□□□□ -1.07
CNOT1-222ENST00000570139 G3BP1Q13283 466 aaKnown RBP eCLIP8.37□□□□□ -1.073e-9■■■□□ 18.5
CNOT1-222ENST00000570139 GRAMD1BQ3KR37 738 aa8.37□□□□□ -1.07
CNOT1-222ENST00000570139 COBLL1Q53SF7 1204 aa8.37□□□□□ -1.07
CNOT1-222ENST00000570139 SPICE1Q8N0Z3 855 aa8.37□□□□□ -1.07
CNOT1-222ENST00000570139 FLAD1Q8NFF5 587 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms