RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 K7ENM7 598 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 EPHA7Q15375 998 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 CCDC137Q6PK04 289 aaKnown RBP15.65■□□□□ 0.1
VPS35-210ENST00000568784 KRT35Q92764 455 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 RBM17Q96I25 401 aaKnown RBP15.65■□□□□ 0.1
VPS35-210ENST00000568784 NAP1L4Q99733 375 aaKnown RBP15.65■□□□□ 0.1
VPS35-210ENST00000568784 POLLQ9UGP5 575 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.64■□□□□ 0.09
VPS35-210ENST00000568784 FOXN3O00409 490 aaPredicted RBP15.64■□□□□ 0.09
VPS35-210ENST00000568784 EDIL3O43854 480 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 TM4SF1P30408 202 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 LRRC57Q8N9N7 239 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 INTS2Q9H0H0 1204 aaKnown RBP15.64■□□□□ 0.09
VPS35-210ENST00000568784 PARVGQ9HBI0 331 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 CACNA1SQ13698 1873 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 TOGARAM1Q9Y4F4 1720 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 KRT5P13647 590 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 FMO5P49326 533 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 SLC12A3P55017 1021 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 STXBP4Q6ZWJ1 553 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 A0A1W2PRG0 241 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 FAM86B1E9PN63 330 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 FAM86B2P0C5J1 330 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 AGBL2Q5U5Z8 902 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 ZFPM1Q8IX07 1006 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 L3MBTL1Q9Y468 752 aa15.64■□□□□ 0.09
VPS35-210ENST00000568784 BCRP11274 1271 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 CDC25CP30307 473 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 CBWD6Q4V339 395 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 CBWD3Q5JTY5 395 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 CBWD5Q5RIA9 395 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 FAM47EQ6ZV65 393 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 RPUSD2Q8IZ73 545 aaKnown RBP15.63■□□□□ 0.09
VPS35-210ENST00000568784 ALG3Q92685 438 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 YY1AP1Q9H869 796 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 CNOT10Q9H9A5 744 aaKnown RBP15.63■□□□□ 0.09
VPS35-210ENST00000568784 SLC12A6Q9UHW9 1150 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 TISP43B9A030 160 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 EML1O00423 815 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 NEBLO76041 1014 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 DLATP10515 647 aaKnown RBP15.63■□□□□ 0.09
VPS35-210ENST00000568784 SCP2P22307 547 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 HP1BP3Q5SSJ5 553 aaPredicted RBP15.63■□□□□ 0.09
VPS35-210ENST00000568784 BANK1Q8NDB2 785 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 SLC24A3Q9HC58 644 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 FGFR1OP2Q9NVK5 253 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 SERPINB2P05120 415 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 ECHS1P30084 290 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 ELF1P32519 619 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 EIF3BP55884 814 aaKnown RBP15.63■□□□□ 0.09
VPS35-210ENST00000568784 TNIP1Q15025 636 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 SWT1Q5T5J6 900 aaKnown RBP15.63■□□□□ 0.09
VPS35-210ENST00000568784 TBC1D16Q8TBP0 767 aa15.63■□□□□ 0.09
VPS35-210ENST00000568784 POP1Q99575 1024 aaKnown RBP15.63■□□□□ 0.09
VPS35-210ENST00000568784 PRR5LQ6MZQ0 368 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 CYP4F22Q6NT55 531 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 SYT2Q8N9I0 419 aaPredicted RBP15.62■□□□□ 0.09
VPS35-210ENST00000568784 TEKT1Q969V4 418 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 ZNF653Q96CK0 615 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 USTQ9Y2C2 406 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 PCDHAC2Q9Y5I4 1007 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 CCT8L1PA6NM43 557 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 RPA1P27694 616 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 SP4Q02446 784 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 C2CD6Q53TS8 623 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 SLC30A5Q8TAD4 765 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 KLHL29Q96CT2 875 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 SNED1Q8TER0 1413 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 DDX60Q8IY21 1712 aaKnown RBP15.62■□□□□ 0.09
VPS35-210ENST00000568784 TCP11X1B4DZS4 312 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 F5H6K3 240 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 MSH4O15457 936 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 SKAP2O75563 359 aaPredicted RBP15.62■□□□□ 0.09
VPS35-210ENST00000568784 STX2P32856 288 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 KLRC3Q07444 240 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 BYSLQ13895 437 aaKnown RBP15.62■□□□□ 0.09
VPS35-210ENST00000568784 GSTA5Q7RTV2 222 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 TAB3Q8N5C8 712 aaPredicted RBP15.62■□□□□ 0.09
VPS35-210ENST00000568784 TATDN2Q93075 761 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 RSRC1Q96IZ7 334 aaKnown RBP15.62■□□□□ 0.09
VPS35-210ENST00000568784 HEMGNQ9BXL5 484 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 EMSYQ7Z589 1322 aa15.62■□□□□ 0.09
VPS35-210ENST00000568784 UBAP1LF5GYI3 381 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 COMTP21964 271 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 UBAP2Q5T6F2 1119 aaKnown RBP15.61■□□□□ 0.09
VPS35-210ENST00000568784 RINT1Q6NUQ1 792 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 BARGINQ6ZT62 677 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 SEPT14Q6ZU15 432 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 TAOK1Q7L7X3 1001 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 KCNV2Q8TDN2 545 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 PABPC3Q9H361 631 aaKnown RBP15.61■□□□□ 0.09
VPS35-210ENST00000568784 ASTN1O14525 1302 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 SMARCA1P28370 1054 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 SSTR3P32745 418 aaPredicted RBP15.61■□□□□ 0.09
VPS35-210ENST00000568784 PEX19P40855 299 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 EPC2Q52LR7 807 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 CPNE8Q86YQ8 564 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 ARHGEF2Q92974 986 aaKnown RBP15.61■□□□□ 0.09
VPS35-210ENST00000568784 KAT5Q92993 513 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 LBHD1Q9BQE6 289 aaPredicted RBP15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms