RNA–Protein interactions for RNA: ENST00000568561.5

NME3-211, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 1 (best)

Gene NME3, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-211ENST00000568561 NGRNQ9NPE2 291 aaKnown RBP17.48■□□□□ 0.39
NME3-211ENST00000568561 HCFC2Q9Y5Z7 792 aa17.48■□□□□ 0.39
NME3-211ENST00000568561 A0A087WZ62 844 aa17.47■□□□□ 0.39
NME3-211ENST00000568561 STBD1O95210 358 aa17.47■□□□□ 0.39
NME3-211ENST00000568561 WEE2P0C1S8 567 aa17.47■□□□□ 0.39
NME3-211ENST00000568561 USP11P51784 963 aa17.47■□□□□ 0.39
NME3-211ENST00000568561 VCPP55072 806 aaKnown RBP17.47■□□□□ 0.39
NME3-211ENST00000568561 BCAR1P56945 870 aa17.47■□□□□ 0.39
NME3-211ENST00000568561 TOB2Q14106 344 aaPredicted RBP17.47■□□□□ 0.39
NME3-211ENST00000568561 SMC1AQ14683 1233 aaKnown RBP17.47■□□□□ 0.39
NME3-211ENST00000568561 PTPN21Q16825 1174 aa17.47■□□□□ 0.39
NME3-211ENST00000568561 ZBTB33Q86T24 672 aa17.47■□□□□ 0.39
NME3-211ENST00000568561 TMEM173Q86WV6 379 aaPredicted RBP17.47■□□□□ 0.39
NME3-211ENST00000568561 FBXL16Q8N461 479 aa17.47■□□□□ 0.39
NME3-211ENST00000568561 FBXL6Q8N531 539 aa17.47■□□□□ 0.39
NME3-211ENST00000568561 AUTS2Q8WXX7 1259 aa17.47■□□□□ 0.39
NME3-211ENST00000568561 CEP89Q96ST8 783 aa17.47■□□□□ 0.39
NME3-211ENST00000568561 FDXACB1Q9BRP7 624 aaPredicted RBP17.47■□□□□ 0.39
NME3-211ENST00000568561 PCDHA4Q9UN74 947 aa17.47■□□□□ 0.39
NME3-211ENST00000568561 C2orf71A6NGG8 1288 aa17.46■□□□□ 0.39
NME3-211ENST00000568561 MEIS3P2A8K0S8 358 aa17.46■□□□□ 0.39
NME3-211ENST00000568561 ZC3H11AO75152 810 aaKnown RBP eCLIP17.46■□□□□ 0.395e-7■□□□□ 8.5
NME3-211ENST00000568561 PDGFBP01127 241 aaPredicted RBP17.46■□□□□ 0.39
NME3-211ENST00000568561 Q4G0T1 1027 aa17.46■□□□□ 0.39
NME3-211ENST00000568561 PLA2G4FQ68DD2 849 aa17.46■□□□□ 0.39
NME3-211ENST00000568561 KSR1Q8IVT5 923 aa17.46■□□□□ 0.39
NME3-211ENST00000568561 ASIC4Q96FT7 647 aa17.46■□□□□ 0.39
NME3-211ENST00000568561 GCOM2Q9BZD3 368 aaPredicted RBP17.46■□□□□ 0.39
NME3-211ENST00000568561 SH3GLB2Q9NR46 395 aa17.46■□□□□ 0.39
NME3-211ENST00000568561 DACT1Q9NYF0 836 aa17.46■□□□□ 0.39
NME3-211ENST00000568561 PIN4Q9Y237 131 aaKnown RBP17.46■□□□□ 0.39
NME3-211ENST00000568561 INPP5FQ9Y2H2 1132 aa17.46■□□□□ 0.39
NME3-211ENST00000568561 ARID2Q68CP9 1835 aa17.46■□□□□ 0.39
NME3-211ENST00000568561 DTNBO60941 627 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 CLASP2O75122 1294 aaKnown RBP17.45■□□□□ 0.38
NME3-211ENST00000568561 PSMA5P28066 241 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 PHKA2P46019 1235 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 EVCP57679 992 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 SSRP1Q08945 709 aaKnown RBP17.45■□□□□ 0.38
NME3-211ENST00000568561 TCF15Q12870 199 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 STK3Q13188 491 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 NPY5RQ15761 445 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 XKR3Q5GH77 459 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 TWF2Q6IBS0 349 aaKnown RBP17.45■□□□□ 0.38
NME3-211ENST00000568561 KANK3Q6NY19 840 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 B3GNT9Q6UX72 402 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 RHPN2Q8IUC4 686 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 TRIM22Q8IYM9 498 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 C12orf76Q8N812 135 aaPredicted RBP17.45■□□□□ 0.38
NME3-211ENST00000568561 MRPL43Q8N983 215 aaKnown RBP17.45■□□□□ 0.38
NME3-211ENST00000568561 ETNPPLQ8TBG4 499 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 FEZF2Q8TBJ5 459 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 BCL7CQ8WUZ0 217 aaPredicted RBP17.45■□□□□ 0.38
NME3-211ENST00000568561 CASP10Q92851 521 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 TMEM169Q96HH4 297 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 NLRP4Q96MN2 994 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 MRPL9Q9BYD2 267 aaKnown RBP17.45■□□□□ 0.38
NME3-211ENST00000568561 NIFKQ9BYG3 293 aaKnown RBP17.45■□□□□ 0.38
NME3-211ENST00000568561 POMKQ9H5K3 350 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 FAM86C1Q9NVL1 165 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 SUCLA2Q9P2R7 463 aaPredicted RBP17.45■□□□□ 0.38
NME3-211ENST00000568561 ZFHX2Q9C0A1 2572 aaPredicted RBP17.45■□□□□ 0.38
NME3-211ENST00000568561 USP34Q70CQ2 3546 aa17.45■□□□□ 0.38
NME3-211ENST00000568561 DENND4AQ7Z401 1863 aa17.44■□□□□ 0.38
NME3-211ENST00000568561 IGKV6-21A0A0C4DH24 114 aa17.44■□□□□ 0.38
NME3-211ENST00000568561 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.44■□□□□ 0.38
NME3-211ENST00000568561 DDX11L8A8MPP1 907 aa17.44■□□□□ 0.38
NME3-211ENST00000568561 SLC37A4O43826 429 aa17.44■□□□□ 0.38
NME3-211ENST00000568561 EOMESO95936 686 aa17.44■□□□□ 0.38
NME3-211ENST00000568561 HOXB8P17481 243 aaPredicted RBP17.44■□□□□ 0.38
NME3-211ENST00000568561 SFPQP23246 707 aaKnown RBP eCLIP17.44■□□□□ 0.38
NME3-211ENST00000568561 ALDH7A1P49419 539 aaKnown RBP17.44■□□□□ 0.38
NME3-211ENST00000568561 RARS2Q5T160 578 aaKnown RBP17.44■□□□□ 0.38
NME3-211ENST00000568561 BLIDQ8IZY5 108 aa17.44■□□□□ 0.38
NME3-211ENST00000568561 VPS52Q8N1B4 723 aa17.44■□□□□ 0.38
NME3-211ENST00000568561 ZNF710Q8N1W2 664 aa17.44■□□□□ 0.38
NME3-211ENST00000568561 RDM1Q8NG50 284 aa17.44■□□□□ 0.38
NME3-211ENST00000568561 GBP3Q9H0R5 595 aa17.44■□□□□ 0.38
NME3-211ENST00000568561 SMOC2Q9H3U7 446 aa17.44■□□□□ 0.38
NME3-211ENST00000568561 TBC1D13Q9NVG8 400 aa17.44■□□□□ 0.38
NME3-211ENST00000568561 CYP3A7-CYP3A51PA0A087WV96 503 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 C2CD4DB7Z1M9 353 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 M0R2N6 131 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 EML1O00423 815 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 B4GALT3O60512 393 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 CXCL14O95715 111 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 EPCAMP16422 314 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 CYP3A7P24462 503 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 DNM2P50570 870 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 PTPN5P54829 565 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 INF2Q27J81 1249 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 TPRNQ4KMQ1 711 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 ANO5Q75V66 913 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 RUFY3Q7L099 469 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 CATSPER4Q7RTX7 472 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 KREMEN2Q8NCW0 462 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 ZBP1Q9H171 429 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 BMP2KQ9NSY1 1161 aaPredicted RBP17.43■□□□□ 0.38
NME3-211ENST00000568561 DNAJB4Q9UDY4 337 aa17.43■□□□□ 0.38
NME3-211ENST00000568561 DDX25Q9UHL0 483 aaKnown RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms